Date: 2024-10-28T09:14:09+00:00

Actual source code: cyclic.c
slepc-3.22.1 2024-10-28
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      1: /*
      2:    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
      3:    SLEPc - Scalable Library for Eigenvalue Problem Computations
      4:    Copyright (c) 2002-, Universitat Politecnica de Valencia, Spain

      6:    This file is part of SLEPc.
      7:    SLEPc is distributed under a 2-clause BSD license (see LICENSE).
      8:    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
      9: */
     10: /*
     11:    SLEPc singular value solver: "cyclic"

     13:    Method: Uses a Hermitian eigensolver for H(A) = [ 0  A ; A^T 0 ]
     14: */

     16: #include <slepc/private/svdimpl.h>
     17: #include <slepc/private/bvimpl.h>
     18: #include "cyclic.h"

     20: static PetscErrorCode MatMult_Cyclic(Mat B,Vec x,Vec y)
     21: {
     22:   SVD_CYCLIC_SHELL  *ctx;
     23:   const PetscScalar *px;
     24:   PetscScalar       *py;
     25:   PetscInt          m;

     27:   PetscFunctionBegin;
     28:   PetscCall(MatShellGetContext(B,&ctx));
     29:   PetscCall(MatGetLocalSize(ctx->A,&m,NULL));
     30:   PetscCall(VecGetArrayRead(x,&px));
     31:   PetscCall(VecGetArrayWrite(y,&py));
     32:   PetscCall(VecPlaceArray(ctx->x1,px));
     33:   PetscCall(VecPlaceArray(ctx->x2,px+m));
     34:   PetscCall(VecPlaceArray(ctx->y1,py));
     35:   PetscCall(VecPlaceArray(ctx->y2,py+m));
     36:   PetscCall(MatMult(ctx->A,ctx->x2,ctx->y1));
     37:   PetscCall(MatMult(ctx->AT,ctx->x1,ctx->y2));
     38:   PetscCall(VecResetArray(ctx->x1));
     39:   PetscCall(VecResetArray(ctx->x2));
     40:   PetscCall(VecResetArray(ctx->y1));
     41:   PetscCall(VecResetArray(ctx->y2));
     42:   PetscCall(VecRestoreArrayRead(x,&px));
     43:   PetscCall(VecRestoreArrayWrite(y,&py));
     44:   PetscFunctionReturn(PETSC_SUCCESS);
     45: }

     47: static PetscErrorCode MatGetDiagonal_Cyclic(Mat B,Vec diag)
     48: {
     49:   PetscFunctionBegin;
     50:   PetscCall(VecSet(diag,0.0));
     51:   PetscFunctionReturn(PETSC_SUCCESS);
     52: }

     54: static PetscErrorCode MatDestroy_Cyclic(Mat B)
     55: {
     56:   SVD_CYCLIC_SHELL *ctx;

     58:   PetscFunctionBegin;
     59:   PetscCall(MatShellGetContext(B,&ctx));
     60:   PetscCall(VecDestroy(&ctx->x1));
     61:   PetscCall(VecDestroy(&ctx->x2));
     62:   PetscCall(VecDestroy(&ctx->y1));
     63:   PetscCall(VecDestroy(&ctx->y2));
     64:   if (ctx->misaligned) {
     65:     PetscCall(VecDestroy(&ctx->wx2));
     66:     PetscCall(VecDestroy(&ctx->wy2));
     67:   }
     68:   PetscCall(PetscFree(ctx));
     69:   PetscFunctionReturn(PETSC_SUCCESS);
     70: }

     72: /*
     73:    Builds cyclic matrix   C = | 0   A |
     74:                               | AT  0 |
     75: */
     76: static PetscErrorCode SVDCyclicGetCyclicMat(SVD svd,Mat A,Mat AT,Mat *C)
     77: {
     78:   SVD_CYCLIC       *cyclic = (SVD_CYCLIC*)svd->data;
     79:   SVD_CYCLIC_SHELL *ctx;
     80:   PetscInt         i,M,N,m,n,Istart,Iend;
     81:   VecType          vtype;
     82:   Mat              Zm,Zn;
     83: #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP)
     84:   PetscBool        gpu;
     85:   const PetscInt   *ranges;
     86:   PetscMPIInt      size;
     87: #endif

     89:   PetscFunctionBegin;
     90:   PetscCall(MatGetSize(A,&M,&N));
     91:   PetscCall(MatGetLocalSize(A,&m,&n));

     93:   if (cyclic->explicitmatrix) {
     94:     PetscCheck(svd->expltrans,PetscObjectComm((PetscObject)svd),PETSC_ERR_SUP,"Cannot use explicit cyclic matrix with implicit transpose");
     95:     PetscCall(MatCreate(PetscObjectComm((PetscObject)svd),&Zm));
     96:     PetscCall(MatSetSizes(Zm,m,m,M,M));
     97:     PetscCall(MatSetFromOptions(Zm));
     98:     PetscCall(MatGetOwnershipRange(Zm,&Istart,&Iend));
     99:     for (i=Istart;i<Iend;i++) PetscCall(MatSetValue(Zm,i,i,0.0,INSERT_VALUES));
    100:     PetscCall(MatAssemblyBegin(Zm,MAT_FINAL_ASSEMBLY));
    101:     PetscCall(MatAssemblyEnd(Zm,MAT_FINAL_ASSEMBLY));
    102:     PetscCall(MatCreate(PetscObjectComm((PetscObject)svd),&Zn));
    103:     PetscCall(MatSetSizes(Zn,n,n,N,N));
    104:     PetscCall(MatSetFromOptions(Zn));
    105:     PetscCall(MatGetOwnershipRange(Zn,&Istart,&Iend));
    106:     for (i=Istart;i<Iend;i++) PetscCall(MatSetValue(Zn,i,i,0.0,INSERT_VALUES));
    107:     PetscCall(MatAssemblyBegin(Zn,MAT_FINAL_ASSEMBLY));
    108:     PetscCall(MatAssemblyEnd(Zn,MAT_FINAL_ASSEMBLY));
    109:     PetscCall(MatCreateTile(1.0,Zm,1.0,A,1.0,AT,1.0,Zn,C));
    110:     PetscCall(MatDestroy(&Zm));
    111:     PetscCall(MatDestroy(&Zn));
    112:   } else {
    113:     PetscCall(PetscNew(&ctx));
    114:     ctx->A       = A;
    115:     ctx->AT      = AT;
    116:     ctx->swapped = svd->swapped;
    117:     PetscCall(MatCreateVecsEmpty(A,&ctx->x2,&ctx->x1));
    118:     PetscCall(MatCreateVecsEmpty(A,&ctx->y2,&ctx->y1));
    119:     PetscCall(MatCreateShell(PetscObjectComm((PetscObject)svd),m+n,m+n,M+N,M+N,ctx,C));
    120:     PetscCall(MatShellSetOperation(*C,MATOP_GET_DIAGONAL,(void(*)(void))MatGetDiagonal_Cyclic));
    121:     PetscCall(MatShellSetOperation(*C,MATOP_DESTROY,(void(*)(void))MatDestroy_Cyclic));
    122: #if defined(PETSC_HAVE_CUDA)
    123:     PetscCall(PetscObjectTypeCompareAny((PetscObject)(svd->swapped?AT:A),&gpu,MATSEQAIJCUSPARSE,MATMPIAIJCUSPARSE,""));
    124:     if (gpu) PetscCall(MatShellSetOperation(*C,MATOP_MULT,(void(*)(void))MatMult_Cyclic_CUDA));
    125:     else
    126: #elif defined(PETSC_HAVE_HIP)
    127:     PetscCall(PetscObjectTypeCompareAny((PetscObject)(svd->swapped?AT:A),&gpu,MATSEQAIJHIPSPARSE,MATMPIAIJHIPSPARSE,""));
    128:     if (gpu) PetscCall(MatShellSetOperation(*C,MATOP_MULT,(void(*)(void))MatMult_Cyclic_HIP));
    129:     else
    130: #endif
    131:       PetscCall(MatShellSetOperation(*C,MATOP_MULT,(void(*)(void))MatMult_Cyclic));
    132:     PetscCall(MatGetVecType(A,&vtype));
    133:     PetscCall(MatSetVecType(*C,vtype));
    134: #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP)
    135:     if (gpu) {
    136:       /* check alignment of bottom block */
    137:       PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)ctx->x1),&size));
    138:       PetscCall(VecGetOwnershipRanges(ctx->x1,&ranges));
    139:       for (i=0;i<size;i++) {
    140:         ctx->misaligned = (((ranges[i+1]-ranges[i])*sizeof(PetscScalar))%16)? PETSC_TRUE: PETSC_FALSE;
    141:         if (ctx->misaligned) break;
    142:       }
    143:       if (ctx->misaligned) {  /* create work vectors for MatMult */
    144:         PetscCall(VecDuplicate(ctx->x2,&ctx->wx2));
    145:         PetscCall(VecDuplicate(ctx->y2,&ctx->wy2));
    146:       }
    147:     }
    148: #endif
    149:   }
    150:   PetscFunctionReturn(PETSC_SUCCESS);
    151: }

    153: static PetscErrorCode MatMult_ECross(Mat B,Vec x,Vec y)
    154: {
    155:   SVD_CYCLIC_SHELL  *ctx;
    156:   const PetscScalar *px;
    157:   PetscScalar       *py;
    158:   PetscInt          mn,m,n;

    160:   PetscFunctionBegin;
    161:   PetscCall(MatShellGetContext(B,&ctx));
    162:   PetscCall(MatGetLocalSize(ctx->A,NULL,&n));
    163:   PetscCall(VecGetLocalSize(y,&mn));
    164:   m = mn-n;
    165:   PetscCall(VecGetArrayRead(x,&px));
    166:   PetscCall(VecGetArrayWrite(y,&py));
    167:   PetscCall(VecPlaceArray(ctx->x1,px));
    168:   PetscCall(VecPlaceArray(ctx->x2,px+m));
    169:   PetscCall(VecPlaceArray(ctx->y1,py));
    170:   PetscCall(VecPlaceArray(ctx->y2,py+m));
    171:   PetscCall(VecCopy(ctx->x1,ctx->y1));
    172:   PetscCall(MatMult(ctx->A,ctx->x2,ctx->w));
    173:   PetscCall(MatMult(ctx->AT,ctx->w,ctx->y2));
    174:   PetscCall(VecResetArray(ctx->x1));
    175:   PetscCall(VecResetArray(ctx->x2));
    176:   PetscCall(VecResetArray(ctx->y1));
    177:   PetscCall(VecResetArray(ctx->y2));
    178:   PetscCall(VecRestoreArrayRead(x,&px));
    179:   PetscCall(VecRestoreArrayWrite(y,&py));
    180:   PetscFunctionReturn(PETSC_SUCCESS);
    181: }

    183: static PetscErrorCode MatGetDiagonal_ECross(Mat B,Vec d)
    184: {
    185:   SVD_CYCLIC_SHELL  *ctx;
    186:   PetscScalar       *pd;
    187:   PetscMPIInt       len;
    188:   PetscInt          mn,m,n,N,i,j,start,end,ncols;
    189:   PetscScalar       *work1,*work2,*diag;
    190:   const PetscInt    *cols;
    191:   const PetscScalar *vals;

    193:   PetscFunctionBegin;
    194:   PetscCall(MatShellGetContext(B,&ctx));
    195:   PetscCall(MatGetLocalSize(ctx->A,NULL,&n));
    196:   PetscCall(VecGetLocalSize(d,&mn));
    197:   m = mn-n;
    198:   PetscCall(VecGetArrayWrite(d,&pd));
    199:   PetscCall(VecPlaceArray(ctx->y1,pd));
    200:   PetscCall(VecSet(ctx->y1,1.0));
    201:   PetscCall(VecResetArray(ctx->y1));
    202:   PetscCall(VecPlaceArray(ctx->y2,pd+m));
    203:   if (!ctx->diag) {
    204:     /* compute diagonal from rows and store in ctx->diag */
    205:     PetscCall(VecDuplicate(ctx->y2,&ctx->diag));
    206:     PetscCall(MatGetSize(ctx->A,NULL,&N));
    207:     PetscCall(PetscCalloc2(N,&work1,N,&work2));
    208:     if (ctx->swapped) {
    209:       PetscCall(MatGetOwnershipRange(ctx->AT,&start,&end));
    210:       for (i=start;i<end;i++) {
    211:         PetscCall(MatGetRow(ctx->AT,i,&ncols,NULL,&vals));
    212:         for (j=0;j<ncols;j++) work1[i] += vals[j]*vals[j];
    213:         PetscCall(MatRestoreRow(ctx->AT,i,&ncols,NULL,&vals));
    214:       }
    215:     } else {
    216:       PetscCall(MatGetOwnershipRange(ctx->A,&start,&end));
    217:       for (i=start;i<end;i++) {
    218:         PetscCall(MatGetRow(ctx->A,i,&ncols,&cols,&vals));
    219:         for (j=0;j<ncols;j++) work1[cols[j]] += vals[j]*vals[j];
    220:         PetscCall(MatRestoreRow(ctx->A,i,&ncols,&cols,&vals));
    221:       }
    222:     }
    223:     PetscCall(PetscMPIIntCast(N,&len));
    224:     PetscCallMPI(MPIU_Allreduce(work1,work2,len,MPIU_SCALAR,MPIU_SUM,PetscObjectComm((PetscObject)B)));
    225:     PetscCall(VecGetOwnershipRange(ctx->diag,&start,&end));
    226:     PetscCall(VecGetArrayWrite(ctx->diag,&diag));
    227:     for (i=start;i<end;i++) diag[i-start] = work2[i];
    228:     PetscCall(VecRestoreArrayWrite(ctx->diag,&diag));
    229:     PetscCall(PetscFree2(work1,work2));
    230:   }
    231:   PetscCall(VecCopy(ctx->diag,ctx->y2));
    232:   PetscCall(VecResetArray(ctx->y2));
    233:   PetscCall(VecRestoreArrayWrite(d,&pd));
    234:   PetscFunctionReturn(PETSC_SUCCESS);
    235: }

    237: static PetscErrorCode MatDestroy_ECross(Mat B)
    238: {
    239:   SVD_CYCLIC_SHELL *ctx;

    241:   PetscFunctionBegin;
    242:   PetscCall(MatShellGetContext(B,&ctx));
    243:   PetscCall(VecDestroy(&ctx->x1));
    244:   PetscCall(VecDestroy(&ctx->x2));
    245:   PetscCall(VecDestroy(&ctx->y1));
    246:   PetscCall(VecDestroy(&ctx->y2));
    247:   PetscCall(VecDestroy(&ctx->diag));
    248:   PetscCall(VecDestroy(&ctx->w));
    249:   if (ctx->misaligned) {
    250:     PetscCall(VecDestroy(&ctx->wx2));
    251:     PetscCall(VecDestroy(&ctx->wy2));
    252:   }
    253:   PetscCall(PetscFree(ctx));
    254:   PetscFunctionReturn(PETSC_SUCCESS);
    255: }

    257: /*
    258:    Builds extended cross product matrix   C = | I_m   0  |
    259:                                               |  0  AT*A |
    260:    t is an auxiliary Vec used to take the dimensions of the upper block
    261: */
    262: static PetscErrorCode SVDCyclicGetECrossMat(SVD svd,Mat A,Mat AT,Mat *C,Vec t)
    263: {
    264:   SVD_CYCLIC       *cyclic = (SVD_CYCLIC*)svd->data;
    265:   SVD_CYCLIC_SHELL *ctx;
    266:   PetscInt         i,M,N,m,n,Istart,Iend;
    267:   VecType          vtype;
    268:   Mat              Id,Zm,Zn,ATA;
    269: #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP)
    270:   PetscBool        gpu;
    271:   const PetscInt   *ranges;
    272:   PetscMPIInt      size;
    273: #endif

    275:   PetscFunctionBegin;
    276:   PetscCall(MatGetSize(A,NULL,&N));
    277:   PetscCall(MatGetLocalSize(A,NULL,&n));
    278:   PetscCall(VecGetSize(t,&M));
    279:   PetscCall(VecGetLocalSize(t,&m));

    281:   if (cyclic->explicitmatrix) {
    282:     PetscCheck(svd->expltrans,PetscObjectComm((PetscObject)svd),PETSC_ERR_SUP,"Cannot use explicit cyclic matrix with implicit transpose");
    283:     PetscCall(MatCreateConstantDiagonal(PetscObjectComm((PetscObject)svd),m,m,M,M,1.0,&Id));
    284:     PetscCall(MatCreate(PetscObjectComm((PetscObject)svd),&Zm));
    285:     PetscCall(MatSetSizes(Zm,m,n,M,N));
    286:     PetscCall(MatSetFromOptions(Zm));
    287:     PetscCall(MatGetOwnershipRange(Zm,&Istart,&Iend));
    288:     for (i=Istart;i<Iend;i++) {
    289:       if (i<N) PetscCall(MatSetValue(Zm,i,i,0.0,INSERT_VALUES));
    290:     }
    291:     PetscCall(MatAssemblyBegin(Zm,MAT_FINAL_ASSEMBLY));
    292:     PetscCall(MatAssemblyEnd(Zm,MAT_FINAL_ASSEMBLY));
    293:     PetscCall(MatCreate(PetscObjectComm((PetscObject)svd),&Zn));
    294:     PetscCall(MatSetSizes(Zn,n,m,N,M));
    295:     PetscCall(MatSetFromOptions(Zn));
    296:     PetscCall(MatGetOwnershipRange(Zn,&Istart,&Iend));
    297:     for (i=Istart;i<Iend;i++) {
    298:       if (i<m) PetscCall(MatSetValue(Zn,i,i,0.0,INSERT_VALUES));
    299:     }
    300:     PetscCall(MatAssemblyBegin(Zn,MAT_FINAL_ASSEMBLY));
    301:     PetscCall(MatAssemblyEnd(Zn,MAT_FINAL_ASSEMBLY));
    302:     PetscCall(MatProductCreate(AT,A,NULL,&ATA));
    303:     PetscCall(MatProductSetType(ATA,MATPRODUCT_AB));
    304:     PetscCall(MatProductSetFromOptions(ATA));
    305:     PetscCall(MatProductSymbolic(ATA));
    306:     PetscCall(MatProductNumeric(ATA));
    307:     PetscCall(MatCreateTile(1.0,Id,1.0,Zm,1.0,Zn,1.0,ATA,C));
    308:     PetscCall(MatDestroy(&Id));
    309:     PetscCall(MatDestroy(&Zm));
    310:     PetscCall(MatDestroy(&Zn));
    311:     PetscCall(MatDestroy(&ATA));
    312:   } else {
    313:     PetscCall(PetscNew(&ctx));
    314:     ctx->A       = A;
    315:     ctx->AT      = AT;
    316:     ctx->swapped = svd->swapped;
    317:     PetscCall(VecDuplicateEmpty(t,&ctx->x1));
    318:     PetscCall(VecDuplicateEmpty(t,&ctx->y1));
    319:     PetscCall(MatCreateVecsEmpty(A,&ctx->x2,NULL));
    320:     PetscCall(MatCreateVecsEmpty(A,&ctx->y2,NULL));
    321:     PetscCall(MatCreateVecs(A,NULL,&ctx->w));
    322:     PetscCall(MatCreateShell(PetscObjectComm((PetscObject)svd),m+n,m+n,M+N,M+N,ctx,C));
    323:     PetscCall(MatShellSetOperation(*C,MATOP_GET_DIAGONAL,(void(*)(void))MatGetDiagonal_ECross));
    324:     PetscCall(MatShellSetOperation(*C,MATOP_DESTROY,(void(*)(void))MatDestroy_ECross));
    325: #if defined(PETSC_HAVE_CUDA)
    326:     PetscCall(PetscObjectTypeCompareAny((PetscObject)(svd->swapped?AT:A),&gpu,MATSEQAIJCUSPARSE,MATMPIAIJCUSPARSE,""));
    327:     if (gpu) PetscCall(MatShellSetOperation(*C,MATOP_MULT,(void(*)(void))MatMult_ECross_CUDA));
    328:     else
    329: #elif defined(PETSC_HAVE_HIP)
    330:     PetscCall(PetscObjectTypeCompareAny((PetscObject)(svd->swapped?AT:A),&gpu,MATSEQAIJHIPSPARSE,MATMPIAIJHIPSPARSE,""));
    331:     if (gpu) PetscCall(MatShellSetOperation(*C,MATOP_MULT,(void(*)(void))MatMult_ECross_HIP));
    332:     else
    333: #endif
    334:       PetscCall(MatShellSetOperation(*C,MATOP_MULT,(void(*)(void))MatMult_ECross));
    335:     PetscCall(MatGetVecType(A,&vtype));
    336:     PetscCall(MatSetVecType(*C,vtype));
    337: #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP)
    338:     if (gpu) {
    339:       /* check alignment of bottom block */
    340:       PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)ctx->x1),&size));
    341:       PetscCall(VecGetOwnershipRanges(ctx->x1,&ranges));
    342:       for (i=0;i<size;i++) {
    343:         ctx->misaligned = (((ranges[i+1]-ranges[i])*sizeof(PetscScalar))%16)? PETSC_TRUE: PETSC_FALSE;
    344:         if (ctx->misaligned) break;
    345:       }
    346:       if (ctx->misaligned) {  /* create work vectors for MatMult */
    347:         PetscCall(VecDuplicate(ctx->x2,&ctx->wx2));
    348:         PetscCall(VecDuplicate(ctx->y2,&ctx->wy2));
    349:       }
    350:     }
    351: #endif
    352:   }
    353:   PetscFunctionReturn(PETSC_SUCCESS);
    354: }

    356: /* Convergence test relative to the norm of R (used in GSVD only) */
    357: static PetscErrorCode EPSConv_Cyclic(EPS eps,PetscScalar eigr,PetscScalar eigi,PetscReal res,PetscReal *errest,void *ctx)
    358: {
    359:   SVD svd = (SVD)ctx;

    361:   PetscFunctionBegin;
    362:   *errest = res/PetscMax(svd->nrma,svd->nrmb);
    363:   PetscFunctionReturn(PETSC_SUCCESS);
    364: }

    366: static PetscErrorCode SVDSetUp_Cyclic(SVD svd)
    367: {
    368:   SVD_CYCLIC        *cyclic = (SVD_CYCLIC*)svd->data;
    369:   PetscInt          M,N,m,n,p,k,i,isl,offset,nev,ncv,mpd,maxit;
    370:   PetscReal         tol;
    371:   const PetscScalar *isa,*oa;
    372:   PetscScalar       *va;
    373:   EPSProblemType    ptype;
    374:   PetscBool         trackall,issinv;
    375:   Vec               v,t;
    376:   ST                st;
    377:   Mat               Omega;
    378:   MatType           Atype;

    380:   PetscFunctionBegin;
    381:   PetscCall(MatGetSize(svd->A,&M,&N));
    382:   PetscCall(MatGetLocalSize(svd->A,&m,&n));
    383:   if (!cyclic->eps) PetscCall(SVDCyclicGetEPS(svd,&cyclic->eps));
    384:   PetscCall(MatDestroy(&cyclic->C));
    385:   PetscCall(MatDestroy(&cyclic->D));
    386:   if (svd->isgeneralized) {
    387:     if (svd->which==SVD_SMALLEST) {  /* alternative pencil */
    388:       PetscCall(MatCreateVecs(svd->B,NULL,&t));
    389:       PetscCall(SVDCyclicGetCyclicMat(svd,svd->B,svd->BT,&cyclic->C));
    390:       PetscCall(SVDCyclicGetECrossMat(svd,svd->A,svd->AT,&cyclic->D,t));
    391:     } else {
    392:       PetscCall(MatCreateVecs(svd->A,NULL,&t));
    393:       PetscCall(SVDCyclicGetCyclicMat(svd,svd->A,svd->AT,&cyclic->C));
    394:       PetscCall(SVDCyclicGetECrossMat(svd,svd->B,svd->BT,&cyclic->D,t));
    395:     }
    396:     PetscCall(VecDestroy(&t));
    397:     PetscCall(EPSSetOperators(cyclic->eps,cyclic->C,cyclic->D));
    398:     PetscCall(EPSGetProblemType(cyclic->eps,&ptype));
    399:     if (!ptype) PetscCall(EPSSetProblemType(cyclic->eps,EPS_GHEP));
    400:   } else if (svd->ishyperbolic) {
    401:     PetscCall(SVDCyclicGetCyclicMat(svd,svd->A,svd->AT,&cyclic->C));
    402:     PetscCall(MatCreateVecs(cyclic->C,&v,NULL));
    403:     PetscCall(VecSet(v,1.0));
    404:     PetscCall(VecGetArrayRead(svd->omega,&oa));
    405:     PetscCall(VecGetArray(v,&va));
    406:     if (svd->swapped) PetscCall(PetscArraycpy(va+m,oa,n));
    407:     else PetscCall(PetscArraycpy(va,oa,m));
    408:     PetscCall(VecRestoreArrayRead(svd->omega,&oa));
    409:     PetscCall(VecRestoreArray(v,&va));
    410:     PetscCall(MatGetType(svd->OP,&Atype));
    411:     PetscCall(MatCreate(PetscObjectComm((PetscObject)svd),&Omega));
    412:     PetscCall(MatSetSizes(Omega,m+n,m+n,M+N,M+N));
    413:     PetscCall(MatSetType(Omega,Atype));
    414:     PetscCall(MatDiagonalSet(Omega,v,INSERT_VALUES));
    415:     PetscCall(EPSSetOperators(cyclic->eps,cyclic->C,Omega));
    416:     PetscCall(EPSSetProblemType(cyclic->eps,EPS_GHIEP));
    417:     PetscCall(MatDestroy(&Omega));
    418:     PetscCall(VecDestroy(&v));
    419:   } else {
    420:     PetscCall(SVDCyclicGetCyclicMat(svd,svd->A,svd->AT,&cyclic->C));
    421:     PetscCall(EPSSetOperators(cyclic->eps,cyclic->C,NULL));
    422:     PetscCall(EPSSetProblemType(cyclic->eps,EPS_HEP));
    423:   }
    424:   if (!cyclic->usereps) {
    425:     if (svd->which == SVD_LARGEST) {
    426:       PetscCall(EPSGetST(cyclic->eps,&st));
    427:       PetscCall(PetscObjectTypeCompare((PetscObject)st,STSINVERT,&issinv));
    428:       if (issinv) PetscCall(EPSSetWhichEigenpairs(cyclic->eps,EPS_TARGET_MAGNITUDE));
    429:       else if (svd->ishyperbolic) PetscCall(EPSSetWhichEigenpairs(cyclic->eps,EPS_LARGEST_MAGNITUDE));
    430:       else PetscCall(EPSSetWhichEigenpairs(cyclic->eps,EPS_LARGEST_REAL));
    431:     } else {
    432:       if (svd->isgeneralized) {  /* computes sigma^{-1} via alternative pencil */
    433:         PetscCall(EPSSetWhichEigenpairs(cyclic->eps,EPS_LARGEST_REAL));
    434:       } else {
    435:         if (svd->ishyperbolic) PetscCall(EPSSetWhichEigenpairs(cyclic->eps,EPS_TARGET_MAGNITUDE));
    436:         else PetscCall(EPSSetEigenvalueComparison(cyclic->eps,SlepcCompareSmallestPosReal,NULL));
    437:         PetscCall(EPSSetTarget(cyclic->eps,0.0));
    438:       }
    439:     }
    440:     PetscCall(EPSGetDimensions(cyclic->eps,&nev,&ncv,&mpd));
    441:     PetscCheck(nev==1 || nev>=2*svd->nsv,PetscObjectComm((PetscObject)svd),PETSC_ERR_ARG_WRONG,"The number of requested eigenvalues %" PetscInt_FMT " must be at least 2*%" PetscInt_FMT,nev,svd->nsv);
    442:     nev = PetscMax(nev,2*svd->nsv);
    443:     if (ncv==PETSC_DETERMINE && svd->ncv!=PETSC_DETERMINE) ncv = PetscMax(3*svd->nsv,svd->ncv);
    444:     if (mpd==PETSC_DETERMINE && svd->mpd!=PETSC_DETERMINE) mpd = svd->mpd;
    445:     PetscCall(EPSSetDimensions(cyclic->eps,nev,ncv,mpd));
    446:     PetscCall(EPSGetTolerances(cyclic->eps,&tol,&maxit));
    447:     if (tol==(PetscReal)PETSC_DETERMINE) tol = svd->tol==(PetscReal)PETSC_DETERMINE? SLEPC_DEFAULT_TOL/10.0: svd->tol;
    448:     if (maxit==PETSC_DETERMINE) maxit = svd->max_it;
    449:     PetscCall(EPSSetTolerances(cyclic->eps,tol,maxit));
    450:     switch (svd->conv) {
    451:     case SVD_CONV_ABS:
    452:       PetscCall(EPSSetConvergenceTest(cyclic->eps,EPS_CONV_ABS));break;
    453:     case SVD_CONV_REL:
    454:       PetscCall(EPSSetConvergenceTest(cyclic->eps,EPS_CONV_REL));break;
    455:     case SVD_CONV_NORM:
    456:       if (svd->isgeneralized) {
    457:         if (!svd->nrma) PetscCall(MatNorm(svd->OP,NORM_INFINITY,&svd->nrma));
    458:         if (!svd->nrmb) PetscCall(MatNorm(svd->OPb,NORM_INFINITY,&svd->nrmb));
    459:         PetscCall(EPSSetConvergenceTestFunction(cyclic->eps,EPSConv_Cyclic,svd,NULL));
    460:       } else {
    461:         PetscCall(EPSSetConvergenceTest(cyclic->eps,EPS_CONV_NORM));break;
    462:       }
    463:       break;
    464:     case SVD_CONV_MAXIT:
    465:       SETERRQ(PetscObjectComm((PetscObject)svd),PETSC_ERR_SUP,"Maxit convergence test not supported in this solver");
    466:     case SVD_CONV_USER:
    467:       SETERRQ(PetscObjectComm((PetscObject)svd),PETSC_ERR_SUP,"User-defined convergence test not supported in this solver");
    468:     }
    469:   }
    470:   SVDCheckUnsupported(svd,SVD_FEATURE_STOPPING);
    471:   /* Transfer the trackall option from svd to eps */
    472:   PetscCall(SVDGetTrackAll(svd,&trackall));
    473:   PetscCall(EPSSetTrackAll(cyclic->eps,trackall));
    474:   /* Transfer the initial subspace from svd to eps */
    475:   if (svd->nini<0 || svd->ninil<0) {
    476:     for (i=0;i<-PetscMin(svd->nini,svd->ninil);i++) {
    477:       PetscCall(MatCreateVecs(cyclic->C,&v,NULL));
    478:       PetscCall(VecGetArrayWrite(v,&va));
    479:       if (svd->isgeneralized) PetscCall(MatGetLocalSize(svd->B,&p,NULL));
    480:       k = (svd->isgeneralized && svd->which==SVD_SMALLEST)? p: m;  /* size of upper block row */
    481:       if (i<-svd->ninil) {
    482:         PetscCall(VecGetArrayRead(svd->ISL[i],&isa));
    483:         if (svd->isgeneralized) {
    484:           PetscCall(VecGetLocalSize(svd->ISL[i],&isl));
    485:           PetscCheck(isl==m+p,PetscObjectComm((PetscObject)svd),PETSC_ERR_SUP,"Size mismatch for left initial vector");
    486:           offset = (svd->which==SVD_SMALLEST)? m: 0;
    487:           PetscCall(PetscArraycpy(va,isa+offset,k));
    488:         } else {
    489:           PetscCall(VecGetLocalSize(svd->ISL[i],&isl));
    490:           PetscCheck(isl==k,PetscObjectComm((PetscObject)svd),PETSC_ERR_SUP,"Size mismatch for left initial vector");
    491:           PetscCall(PetscArraycpy(va,isa,k));
    492:         }
    493:         PetscCall(VecRestoreArrayRead(svd->IS[i],&isa));
    494:       } else PetscCall(PetscArrayzero(&va,k));
    495:       if (i<-svd->nini) {
    496:         PetscCall(VecGetLocalSize(svd->IS[i],&isl));
    497:         PetscCheck(isl==n,PetscObjectComm((PetscObject)svd),PETSC_ERR_SUP,"Size mismatch for right initial vector");
    498:         PetscCall(VecGetArrayRead(svd->IS[i],&isa));
    499:         PetscCall(PetscArraycpy(va+k,isa,n));
    500:         PetscCall(VecRestoreArrayRead(svd->IS[i],&isa));
    501:       } else PetscCall(PetscArrayzero(va+k,n));
    502:       PetscCall(VecRestoreArrayWrite(v,&va));
    503:       PetscCall(VecDestroy(&svd->IS[i]));
    504:       svd->IS[i] = v;
    505:     }
    506:     svd->nini = PetscMin(svd->nini,svd->ninil);
    507:     PetscCall(EPSSetInitialSpace(cyclic->eps,-svd->nini,svd->IS));
    508:     PetscCall(SlepcBasisDestroy_Private(&svd->nini,&svd->IS));
    509:     PetscCall(SlepcBasisDestroy_Private(&svd->ninil,&svd->ISL));
    510:   }
    511:   PetscCall(EPSSetUp(cyclic->eps));
    512:   PetscCall(EPSGetDimensions(cyclic->eps,NULL,&svd->ncv,&svd->mpd));
    513:   svd->ncv = PetscMin(svd->ncv,PetscMin(M,N));
    514:   PetscCall(EPSGetTolerances(cyclic->eps,NULL,&svd->max_it));
    515:   if (svd->tol==(PetscReal)PETSC_DETERMINE) svd->tol = SLEPC_DEFAULT_TOL;

    517:   svd->leftbasis = PETSC_TRUE;
    518:   PetscCall(SVDAllocateSolution(svd,0));
    519:   PetscFunctionReturn(PETSC_SUCCESS);
    520: }

    522: static PetscErrorCode SVDCyclicCheckEigenvalue(SVD svd,PetscScalar er,PetscScalar ei,PetscReal *sigma,PetscBool *isreal)
    523: {
    524:   PetscFunctionBegin;
    525:   if (svd->ishyperbolic && PetscDefined(USE_COMPLEX) && PetscAbsReal(PetscImaginaryPart(er))>10*PetscAbsReal(PetscRealPart(er))) {
    526:     *sigma = PetscImaginaryPart(er);
    527:     if (isreal) *isreal = PETSC_FALSE;
    528:   } else if (svd->ishyperbolic && !PetscDefined(USE_COMPLEX) && PetscAbsScalar(ei)>10*PetscAbsScalar(er)) {
    529:     *sigma = PetscRealPart(ei);
    530:     if (isreal) *isreal = PETSC_FALSE;
    531:   } else {
    532:     *sigma = PetscRealPart(er);
    533:     if (isreal) *isreal = PETSC_TRUE;
    534:   }
    535:   PetscFunctionReturn(PETSC_SUCCESS);
    536: }

    538: static PetscErrorCode SVDSolve_Cyclic(SVD svd)
    539: {
    540:   SVD_CYCLIC     *cyclic = (SVD_CYCLIC*)svd->data;
    541:   PetscInt       i,j,nconv;
    542:   PetscScalar    er,ei;
    543:   PetscReal      sigma;

    545:   PetscFunctionBegin;
    546:   PetscCall(EPSSolve(cyclic->eps));
    547:   PetscCall(EPSGetConverged(cyclic->eps,&nconv));
    548:   PetscCall(EPSGetIterationNumber(cyclic->eps,&svd->its));
    549:   PetscCall(EPSGetConvergedReason(cyclic->eps,(EPSConvergedReason*)&svd->reason));
    550:   for (i=0,j=0;i<nconv;i++) {
    551:     PetscCall(EPSGetEigenvalue(cyclic->eps,i,&er,&ei));
    552:     PetscCall(SVDCyclicCheckEigenvalue(svd,er,ei,&sigma,NULL));
    553:     if (sigma>0.0) {
    554:       if (svd->isgeneralized && svd->which==SVD_SMALLEST) svd->sigma[j] = 1.0/sigma;
    555:       else svd->sigma[j] = sigma;
    556:       j++;
    557:     }
    558:   }
    559:   svd->nconv = j;
    560:   PetscFunctionReturn(PETSC_SUCCESS);
    561: }

    563: static PetscErrorCode SVDComputeVectors_Cyclic_Standard(SVD svd)
    564: {
    565:   SVD_CYCLIC        *cyclic = (SVD_CYCLIC*)svd->data;
    566:   PetscInt          i,j,m,nconv;
    567:   PetscScalar       er,ei;
    568:   PetscReal         sigma;
    569:   const PetscScalar *px;
    570:   Vec               x,x1,x2;

    572:   PetscFunctionBegin;
    573:   PetscCall(MatCreateVecs(cyclic->C,&x,NULL));
    574:   PetscCall(MatGetLocalSize(svd->A,&m,NULL));
    575:   PetscCall(MatCreateVecsEmpty(svd->A,&x2,&x1));
    576:   PetscCall(EPSGetConverged(cyclic->eps,&nconv));
    577:   for (i=0,j=0;i<nconv;i++) {
    578:     PetscCall(EPSGetEigenpair(cyclic->eps,i,&er,&ei,x,NULL));
    579:     PetscCall(SVDCyclicCheckEigenvalue(svd,er,ei,&sigma,NULL));
    580:     if (sigma<0.0) continue;
    581:     PetscCall(VecGetArrayRead(x,&px));
    582:     PetscCall(VecPlaceArray(x1,px));
    583:     PetscCall(VecPlaceArray(x2,px+m));
    584:     PetscCall(BVInsertVec(svd->U,j,x1));
    585:     PetscCall(BVScaleColumn(svd->U,j,PETSC_SQRT2));
    586:     PetscCall(BVInsertVec(svd->V,j,x2));
    587:     PetscCall(BVScaleColumn(svd->V,j,PETSC_SQRT2));
    588:     PetscCall(VecResetArray(x1));
    589:     PetscCall(VecResetArray(x2));
    590:     PetscCall(VecRestoreArrayRead(x,&px));
    591:     j++;
    592:   }
    593:   PetscCall(VecDestroy(&x));
    594:   PetscCall(VecDestroy(&x1));
    595:   PetscCall(VecDestroy(&x2));
    596:   PetscFunctionReturn(PETSC_SUCCESS);
    597: }

    599: static PetscErrorCode SVDComputeVectors_Cyclic_Generalized(SVD svd)
    600: {
    601:   SVD_CYCLIC        *cyclic = (SVD_CYCLIC*)svd->data;
    602:   PetscInt          i,j,m,p,nconv;
    603:   PetscScalar       *dst,er,ei;
    604:   PetscReal         sigma;
    605:   const PetscScalar *src,*px;
    606:   Vec               u,v,x,x1,x2,uv;

    608:   PetscFunctionBegin;
    609:   PetscCall(MatGetLocalSize(svd->A,&m,NULL));
    610:   PetscCall(MatGetLocalSize(svd->B,&p,NULL));
    611:   PetscCall(MatCreateVecs(cyclic->C,&x,NULL));
    612:   if (svd->which==SVD_SMALLEST) PetscCall(MatCreateVecsEmpty(svd->B,&x1,&x2));
    613:   else PetscCall(MatCreateVecsEmpty(svd->A,&x2,&x1));
    614:   PetscCall(MatCreateVecs(svd->A,NULL,&u));
    615:   PetscCall(MatCreateVecs(svd->B,NULL,&v));
    616:   PetscCall(EPSGetConverged(cyclic->eps,&nconv));
    617:   for (i=0,j=0;i<nconv;i++) {
    618:     PetscCall(EPSGetEigenpair(cyclic->eps,i,&er,&ei,x,NULL));
    619:     PetscCall(SVDCyclicCheckEigenvalue(svd,er,ei,&sigma,NULL));
    620:     if (sigma<0.0) continue;
    621:     if (svd->which==SVD_SMALLEST) {
    622:       /* evec_i = 1/sqrt(2)*[ v_i; w_i ],  w_i = x_i/c_i */
    623:       PetscCall(VecGetArrayRead(x,&px));
    624:       PetscCall(VecPlaceArray(x2,px));
    625:       PetscCall(VecPlaceArray(x1,px+p));
    626:       PetscCall(VecCopy(x2,v));
    627:       PetscCall(VecScale(v,PETSC_SQRT2));  /* v_i = sqrt(2)*evec_i_1 */
    628:       PetscCall(VecScale(x1,PETSC_SQRT2)); /* w_i = sqrt(2)*evec_i_2 */
    629:       PetscCall(MatMult(svd->A,x1,u));     /* A*w_i = u_i */
    630:       PetscCall(VecScale(x1,1.0/PetscSqrtScalar(1.0+sigma*sigma)));  /* x_i = w_i*c_i */
    631:       PetscCall(BVInsertVec(svd->V,j,x1));
    632:       PetscCall(VecResetArray(x2));
    633:       PetscCall(VecResetArray(x1));
    634:       PetscCall(VecRestoreArrayRead(x,&px));
    635:     } else {
    636:       /* evec_i = 1/sqrt(2)*[ u_i; w_i ],  w_i = x_i/s_i */
    637:       PetscCall(VecGetArrayRead(x,&px));
    638:       PetscCall(VecPlaceArray(x1,px));
    639:       PetscCall(VecPlaceArray(x2,px+m));
    640:       PetscCall(VecCopy(x1,u));
    641:       PetscCall(VecScale(u,PETSC_SQRT2));  /* u_i = sqrt(2)*evec_i_1 */
    642:       PetscCall(VecScale(x2,PETSC_SQRT2)); /* w_i = sqrt(2)*evec_i_2 */
    643:       PetscCall(MatMult(svd->B,x2,v));     /* B*w_i = v_i */
    644:       PetscCall(VecScale(x2,1.0/PetscSqrtScalar(1.0+sigma*sigma)));  /* x_i = w_i*s_i */
    645:       PetscCall(BVInsertVec(svd->V,j,x2));
    646:       PetscCall(VecResetArray(x1));
    647:       PetscCall(VecResetArray(x2));
    648:       PetscCall(VecRestoreArrayRead(x,&px));
    649:     }
    650:     /* copy [u;v] to U[j] */
    651:     PetscCall(BVGetColumn(svd->U,j,&uv));
    652:     PetscCall(VecGetArrayWrite(uv,&dst));
    653:     PetscCall(VecGetArrayRead(u,&src));
    654:     PetscCall(PetscArraycpy(dst,src,m));
    655:     PetscCall(VecRestoreArrayRead(u,&src));
    656:     PetscCall(VecGetArrayRead(v,&src));
    657:     PetscCall(PetscArraycpy(dst+m,src,p));
    658:     PetscCall(VecRestoreArrayRead(v,&src));
    659:     PetscCall(VecRestoreArrayWrite(uv,&dst));
    660:     PetscCall(BVRestoreColumn(svd->U,j,&uv));
    661:     j++;
    662:   }
    663:   PetscCall(VecDestroy(&x));
    664:   PetscCall(VecDestroy(&x1));
    665:   PetscCall(VecDestroy(&x2));
    666:   PetscCall(VecDestroy(&u));
    667:   PetscCall(VecDestroy(&v));
    668:   PetscFunctionReturn(PETSC_SUCCESS);
    669: }

    671: #if defined(PETSC_USE_COMPLEX)
    672: /* VecMaxAbs: returns the entry of x that has max(abs(x(i))), using w as a workspace vector */
    673: static PetscErrorCode VecMaxAbs(Vec x,Vec w,PetscScalar *v)
    674: {
    675:   PetscMPIInt       size,rank,root;
    676:   const PetscScalar *xx;
    677:   const PetscInt    *ranges;
    678:   PetscReal         val;
    679:   PetscInt          p;

    681:   PetscFunctionBegin;
    682:   PetscCall(VecCopy(x,w));
    683:   PetscCall(VecAbs(w));
    684:   PetscCall(VecMax(w,&p,&val));
    685:   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)x),&size));
    686:   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)x),&rank));
    687:   PetscCall(VecGetOwnershipRanges(x,&ranges));
    688:   for (root=0;root<size;root++) if (p>=ranges[root] && p<ranges[root+1]) break;
    689:   if (rank==root) {
    690:     PetscCall(VecGetArrayRead(x,&xx));
    691:     *v = xx[p-ranges[root]];
    692:     PetscCall(VecRestoreArrayRead(x,&xx));
    693:   }
    694:   PetscCallMPI(MPI_Bcast(v,1,MPIU_SCALAR,root,PetscObjectComm((PetscObject)x)));
    695:   PetscFunctionReturn(PETSC_SUCCESS);
    696: }
    697: #endif

    699: static PetscErrorCode SVDComputeVectors_Cyclic_Hyperbolic(SVD svd)
    700: {
    701:   SVD_CYCLIC        *cyclic = (SVD_CYCLIC*)svd->data;
    702:   PetscInt          i,j,m,n,nconv;
    703:   PetscScalar       er,ei;
    704:   PetscReal         sigma,nrm;
    705:   PetscBool         isreal;
    706:   const PetscScalar *px;
    707:   Vec               u,x,xi=NULL,x1,x2,x1i=NULL,x2i;
    708:   BV                U=NULL,V=NULL;
    709: #if !defined(PETSC_USE_COMPLEX)
    710:   const PetscScalar *pxi;
    711:   PetscReal         nrmr,nrmi;
    712: #else
    713:   PetscScalar       alpha;
    714: #endif

    716:   PetscFunctionBegin;
    717:   PetscCall(MatCreateVecs(cyclic->C,&x,svd->ishyperbolic?&xi:NULL));
    718:   PetscCall(MatGetLocalSize(svd->A,&m,NULL));
    719:   PetscCall(MatCreateVecsEmpty(svd->OP,&x2,&x1));
    720: #if defined(PETSC_USE_COMPLEX)
    721:   PetscCall(MatCreateVecs(svd->OP,&x2i,&x1i));
    722: #else
    723:   PetscCall(MatCreateVecsEmpty(svd->OP,&x2i,&x1i));
    724: #endif
    725:   /* set-up Omega-normalization of U */
    726:   U = svd->swapped? svd->V: svd->U;
    727:   V = svd->swapped? svd->U: svd->V;
    728:   PetscCall(BVGetSizes(U,&n,NULL,NULL));
    729:   PetscCall(BV_SetMatrixDiagonal(U,svd->omega,svd->A));
    730:   PetscCall(EPSGetConverged(cyclic->eps,&nconv));
    731:   for (i=0,j=0;i<nconv;i++) {
    732:     PetscCall(EPSGetEigenpair(cyclic->eps,i,&er,&ei,x,xi));
    733:     PetscCall(SVDCyclicCheckEigenvalue(svd,er,ei,&sigma,&isreal));
    734:     if (sigma<0.0) continue;
    735:     PetscCall(VecGetArrayRead(x,&px));
    736:     if (svd->swapped) {
    737:       PetscCall(VecPlaceArray(x2,px));
    738:       PetscCall(VecPlaceArray(x1,px+m));
    739:     } else {
    740:       PetscCall(VecPlaceArray(x1,px));
    741:       PetscCall(VecPlaceArray(x2,px+n));
    742:     }
    743: #if defined(PETSC_USE_COMPLEX)
    744:     PetscCall(BVInsertVec(U,j,x1));
    745:     PetscCall(BVInsertVec(V,j,x2));
    746:     if (!isreal) {
    747:       PetscCall(VecMaxAbs(x1,x1i,&alpha));
    748:       PetscCall(BVScaleColumn(U,j,PetscAbsScalar(alpha)/alpha));
    749:       PetscCall(BVScaleColumn(V,j,PetscAbsScalar(alpha)/(alpha*PETSC_i)));
    750:     }
    751: #else
    752:     PetscCall(VecGetArrayRead(xi,&pxi));
    753:     if (svd->swapped) {
    754:       PetscCall(VecPlaceArray(x2i,pxi));
    755:       PetscCall(VecPlaceArray(x1i,pxi+m));
    756:     } else {
    757:       PetscCall(VecPlaceArray(x1i,pxi));
    758:       PetscCall(VecPlaceArray(x2i,pxi+n));
    759:     }
    760:     PetscCall(VecNorm(x2,NORM_2,&nrmr));
    761:     PetscCall(VecNorm(x2i,NORM_2,&nrmi));
    762:     if (nrmi>nrmr) {
    763:       if (isreal) {
    764:         PetscCall(BVInsertVec(U,j,x1i));
    765:         PetscCall(BVInsertVec(V,j,x2i));
    766:       } else {
    767:         PetscCall(BVInsertVec(U,j,x1));
    768:         PetscCall(BVInsertVec(V,j,x2i));
    769:       }
    770:     } else {
    771:       if (isreal) {
    772:         PetscCall(BVInsertVec(U,j,x1));
    773:         PetscCall(BVInsertVec(V,j,x2));
    774:       } else {
    775:         PetscCall(BVInsertVec(U,j,x1i));
    776:         PetscCall(BVScaleColumn(U,j,-1.0));
    777:         PetscCall(BVInsertVec(V,j,x2));
    778:       }
    779:     }
    780:     PetscCall(VecResetArray(x1i));
    781:     PetscCall(VecResetArray(x2i));
    782:     PetscCall(VecRestoreArrayRead(xi,&pxi));
    783: #endif
    784:     PetscCall(VecResetArray(x1));
    785:     PetscCall(VecResetArray(x2));
    786:     PetscCall(VecRestoreArrayRead(x,&px));
    787:     PetscCall(BVGetColumn(U,j,&u));
    788:     PetscCall(VecPointwiseMult(u,u,svd->omega));
    789:     PetscCall(BVRestoreColumn(U,j,&u));
    790:     PetscCall(BVNormColumn(U,j,NORM_2,&nrm));
    791:     PetscCall(BVScaleColumn(U,j,1.0/PetscAbs(nrm)));
    792:     svd->sign[j] = PetscSign(nrm);
    793:     PetscCall(BVNormColumn(V,j,NORM_2,&nrm));
    794:     PetscCall(BVScaleColumn(V,j,1.0/nrm));
    795:     j++;
    796:   }
    797:   PetscCall(VecDestroy(&x));
    798:   PetscCall(VecDestroy(&x1));
    799:   PetscCall(VecDestroy(&x2));
    800:   PetscCall(VecDestroy(&xi));
    801:   PetscCall(VecDestroy(&x1i));
    802:   PetscCall(VecDestroy(&x2i));
    803:   PetscFunctionReturn(PETSC_SUCCESS);
    804: }

    806: static PetscErrorCode SVDComputeVectors_Cyclic(SVD svd)
    807: {
    808:   PetscFunctionBegin;
    809:   switch (svd->problem_type) {
    810:     case SVD_STANDARD:
    811:       PetscCall(SVDComputeVectors_Cyclic_Standard(svd));
    812:       break;
    813:     case SVD_GENERALIZED:
    814:       PetscCall(SVDComputeVectors_Cyclic_Generalized(svd));
    815:       break;
    816:     case SVD_HYPERBOLIC:
    817:       PetscCall(SVDComputeVectors_Cyclic_Hyperbolic(svd));
    818:       break;
    819:     default:
    820:       SETERRQ(PetscObjectComm((PetscObject)svd),PETSC_ERR_ARG_WRONG,"Unknown singular value problem type");
    821:   }
    822:   PetscFunctionReturn(PETSC_SUCCESS);
    823: }

    825: static PetscErrorCode EPSMonitor_Cyclic(EPS eps,PetscInt its,PetscInt nconv,PetscScalar *eigr,PetscScalar *eigi,PetscReal *errest,PetscInt nest,void *ctx)
    826: {
    827:   PetscInt       i,j;
    828:   SVD            svd = (SVD)ctx;
    829:   PetscScalar    er,ei;
    830:   PetscReal      sigma;
    831:   ST             st;

    833:   PetscFunctionBegin;
    834:   nconv = 0;
    835:   PetscCall(EPSGetST(eps,&st));
    836:   for (i=0,j=0;i<PetscMin(nest,svd->ncv);i++) {
    837:     er = eigr[i]; ei = eigi[i];
    838:     PetscCall(STBackTransform(st,1,&er,&ei));
    839:     PetscCall(SVDCyclicCheckEigenvalue(svd,er,ei,&sigma,NULL));
    840:     if (sigma>0.0) {
    841:       svd->sigma[j]  = sigma;
    842:       svd->errest[j] = errest[i];
    843:       if (errest[i] && errest[i] < svd->tol) nconv++;
    844:       j++;
    845:     }
    846:   }
    847:   nest = j;
    848:   PetscCall(SVDMonitor(svd,its,nconv,svd->sigma,svd->errest,nest));
    849:   PetscFunctionReturn(PETSC_SUCCESS);
    850: }

    852: static PetscErrorCode SVDSetFromOptions_Cyclic(SVD svd,PetscOptionItems *PetscOptionsObject)
    853: {
    854:   PetscBool      set,val;
    855:   SVD_CYCLIC     *cyclic = (SVD_CYCLIC*)svd->data;
    856:   ST             st;

    858:   PetscFunctionBegin;
    859:   PetscOptionsHeadBegin(PetscOptionsObject,"SVD Cyclic Options");

    861:     PetscCall(PetscOptionsBool("-svd_cyclic_explicitmatrix","Use cyclic explicit matrix","SVDCyclicSetExplicitMatrix",cyclic->explicitmatrix,&val,&set));
    862:     if (set) PetscCall(SVDCyclicSetExplicitMatrix(svd,val));

    864:   PetscOptionsHeadEnd();

    866:   if (!cyclic->eps) PetscCall(SVDCyclicGetEPS(svd,&cyclic->eps));
    867:   if (!cyclic->explicitmatrix && !cyclic->usereps) {
    868:     /* use as default an ST with shell matrix and Jacobi */
    869:     PetscCall(EPSGetST(cyclic->eps,&st));
    870:     PetscCall(STSetMatMode(st,ST_MATMODE_SHELL));
    871:   }
    872:   PetscCall(EPSSetFromOptions(cyclic->eps));
    873:   PetscFunctionReturn(PETSC_SUCCESS);
    874: }

    876: static PetscErrorCode SVDCyclicSetExplicitMatrix_Cyclic(SVD svd,PetscBool explicitmat)
    877: {
    878:   SVD_CYCLIC *cyclic = (SVD_CYCLIC*)svd->data;

    880:   PetscFunctionBegin;
    881:   if (cyclic->explicitmatrix != explicitmat) {
    882:     cyclic->explicitmatrix = explicitmat;
    883:     svd->state = SVD_STATE_INITIAL;
    884:   }
    885:   PetscFunctionReturn(PETSC_SUCCESS);
    886: }

    888: /*@
    889:    SVDCyclicSetExplicitMatrix - Indicate if the eigensolver operator
    890:    H(A) = [ 0  A ; A^T 0 ] must be computed explicitly.

    892:    Logically Collective

    894:    Input Parameters:
    895: +  svd         - singular value solver
    896: -  explicitmat - boolean flag indicating if H(A) is built explicitly

    898:    Options Database Key:
    899: .  -svd_cyclic_explicitmatrix <boolean> - Indicates the boolean flag

    901:    Level: advanced

    903: .seealso: SVDCyclicGetExplicitMatrix()
    904: @*/
    905: PetscErrorCode SVDCyclicSetExplicitMatrix(SVD svd,PetscBool explicitmat)
    906: {
    907:   PetscFunctionBegin;
    910:   PetscTryMethod(svd,"SVDCyclicSetExplicitMatrix_C",(SVD,PetscBool),(svd,explicitmat));
    911:   PetscFunctionReturn(PETSC_SUCCESS);
    912: }

    914: static PetscErrorCode SVDCyclicGetExplicitMatrix_Cyclic(SVD svd,PetscBool *explicitmat)
    915: {
    916:   SVD_CYCLIC *cyclic = (SVD_CYCLIC*)svd->data;

    918:   PetscFunctionBegin;
    919:   *explicitmat = cyclic->explicitmatrix;
    920:   PetscFunctionReturn(PETSC_SUCCESS);
    921: }

    923: /*@
    924:    SVDCyclicGetExplicitMatrix - Returns the flag indicating if H(A) is built explicitly.

    926:    Not Collective

    928:    Input Parameter:
    929: .  svd  - singular value solver

    931:    Output Parameter:
    932: .  explicitmat - the mode flag

    934:    Level: advanced

    936: .seealso: SVDCyclicSetExplicitMatrix()
    937: @*/
    938: PetscErrorCode SVDCyclicGetExplicitMatrix(SVD svd,PetscBool *explicitmat)
    939: {
    940:   PetscFunctionBegin;
    942:   PetscAssertPointer(explicitmat,2);
    943:   PetscUseMethod(svd,"SVDCyclicGetExplicitMatrix_C",(SVD,PetscBool*),(svd,explicitmat));
    944:   PetscFunctionReturn(PETSC_SUCCESS);
    945: }

    947: static PetscErrorCode SVDCyclicSetEPS_Cyclic(SVD svd,EPS eps)
    948: {
    949:   SVD_CYCLIC      *cyclic = (SVD_CYCLIC*)svd->data;

    951:   PetscFunctionBegin;
    952:   PetscCall(PetscObjectReference((PetscObject)eps));
    953:   PetscCall(EPSDestroy(&cyclic->eps));
    954:   cyclic->eps     = eps;
    955:   cyclic->usereps = PETSC_TRUE;
    956:   svd->state      = SVD_STATE_INITIAL;
    957:   PetscFunctionReturn(PETSC_SUCCESS);
    958: }

    960: /*@
    961:    SVDCyclicSetEPS - Associate an eigensolver object (EPS) to the
    962:    singular value solver.

    964:    Collective

    966:    Input Parameters:
    967: +  svd - singular value solver
    968: -  eps - the eigensolver object

    970:    Level: advanced

    972: .seealso: SVDCyclicGetEPS()
    973: @*/
    974: PetscErrorCode SVDCyclicSetEPS(SVD svd,EPS eps)
    975: {
    976:   PetscFunctionBegin;
    979:   PetscCheckSameComm(svd,1,eps,2);
    980:   PetscTryMethod(svd,"SVDCyclicSetEPS_C",(SVD,EPS),(svd,eps));
    981:   PetscFunctionReturn(PETSC_SUCCESS);
    982: }

    984: static PetscErrorCode SVDCyclicGetEPS_Cyclic(SVD svd,EPS *eps)
    985: {
    986:   SVD_CYCLIC     *cyclic = (SVD_CYCLIC*)svd->data;

    988:   PetscFunctionBegin;
    989:   if (!cyclic->eps) {
    990:     PetscCall(EPSCreate(PetscObjectComm((PetscObject)svd),&cyclic->eps));
    991:     PetscCall(PetscObjectIncrementTabLevel((PetscObject)cyclic->eps,(PetscObject)svd,1));
    992:     PetscCall(EPSSetOptionsPrefix(cyclic->eps,((PetscObject)svd)->prefix));
    993:     PetscCall(EPSAppendOptionsPrefix(cyclic->eps,"svd_cyclic_"));
    994:     PetscCall(PetscObjectSetOptions((PetscObject)cyclic->eps,((PetscObject)svd)->options));
    995:     PetscCall(EPSSetWhichEigenpairs(cyclic->eps,EPS_LARGEST_REAL));
    996:     PetscCall(EPSMonitorSet(cyclic->eps,EPSMonitor_Cyclic,svd,NULL));
    997:   }
    998:   *eps = cyclic->eps;
    999:   PetscFunctionReturn(PETSC_SUCCESS);
    1000: }

    1002: /*@
    1003:    SVDCyclicGetEPS - Retrieve the eigensolver object (EPS) associated
    1004:    to the singular value solver.

    1006:    Collective

    1008:    Input Parameter:
    1009: .  svd - singular value solver

    1011:    Output Parameter:
    1012: .  eps - the eigensolver object

    1014:    Level: advanced

    1016: .seealso: SVDCyclicSetEPS()
    1017: @*/
    1018: PetscErrorCode SVDCyclicGetEPS(SVD svd,EPS *eps)
    1019: {
    1020:   PetscFunctionBegin;
    1022:   PetscAssertPointer(eps,2);
    1023:   PetscUseMethod(svd,"SVDCyclicGetEPS_C",(SVD,EPS*),(svd,eps));
    1024:   PetscFunctionReturn(PETSC_SUCCESS);
    1025: }

    1027: static PetscErrorCode SVDView_Cyclic(SVD svd,PetscViewer viewer)
    1028: {
    1029:   SVD_CYCLIC     *cyclic = (SVD_CYCLIC*)svd->data;
    1030:   PetscBool      isascii;

    1032:   PetscFunctionBegin;
    1033:   PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&isascii));
    1034:   if (isascii) {
    1035:     if (!cyclic->eps) PetscCall(SVDCyclicGetEPS(svd,&cyclic->eps));
    1036:     PetscCall(PetscViewerASCIIPrintf(viewer,"  %s matrix\n",cyclic->explicitmatrix?"explicit":"implicit"));
    1037:     PetscCall(PetscViewerASCIIPushTab(viewer));
    1038:     PetscCall(EPSView(cyclic->eps,viewer));
    1039:     PetscCall(PetscViewerASCIIPopTab(viewer));
    1040:   }
    1041:   PetscFunctionReturn(PETSC_SUCCESS);
    1042: }

    1044: static PetscErrorCode SVDReset_Cyclic(SVD svd)
    1045: {
    1046:   SVD_CYCLIC     *cyclic = (SVD_CYCLIC*)svd->data;

    1048:   PetscFunctionBegin;
    1049:   PetscCall(EPSReset(cyclic->eps));
    1050:   PetscCall(MatDestroy(&cyclic->C));
    1051:   PetscCall(MatDestroy(&cyclic->D));
    1052:   PetscFunctionReturn(PETSC_SUCCESS);
    1053: }

    1055: static PetscErrorCode SVDDestroy_Cyclic(SVD svd)
    1056: {
    1057:   SVD_CYCLIC     *cyclic = (SVD_CYCLIC*)svd->data;

    1059:   PetscFunctionBegin;
    1060:   PetscCall(EPSDestroy(&cyclic->eps));
    1061:   PetscCall(PetscFree(svd->data));
    1062:   PetscCall(PetscObjectComposeFunction((PetscObject)svd,"SVDCyclicSetEPS_C",NULL));
    1063:   PetscCall(PetscObjectComposeFunction((PetscObject)svd,"SVDCyclicGetEPS_C",NULL));
    1064:   PetscCall(PetscObjectComposeFunction((PetscObject)svd,"SVDCyclicSetExplicitMatrix_C",NULL));
    1065:   PetscCall(PetscObjectComposeFunction((PetscObject)svd,"SVDCyclicGetExplicitMatrix_C",NULL));
    1066:   PetscFunctionReturn(PETSC_SUCCESS);
    1067: }

    1069: SLEPC_EXTERN PetscErrorCode SVDCreate_Cyclic(SVD svd)
    1070: {
    1071:   SVD_CYCLIC     *cyclic;

    1073:   PetscFunctionBegin;
    1074:   PetscCall(PetscNew(&cyclic));
    1075:   svd->data                = (void*)cyclic;
    1076:   svd->ops->solve          = SVDSolve_Cyclic;
    1077:   svd->ops->solveg         = SVDSolve_Cyclic;
    1078:   svd->ops->solveh         = SVDSolve_Cyclic;
    1079:   svd->ops->setup          = SVDSetUp_Cyclic;
    1080:   svd->ops->setfromoptions = SVDSetFromOptions_Cyclic;
    1081:   svd->ops->destroy        = SVDDestroy_Cyclic;
    1082:   svd->ops->reset          = SVDReset_Cyclic;
    1083:   svd->ops->view           = SVDView_Cyclic;
    1084:   svd->ops->computevectors = SVDComputeVectors_Cyclic;
    1085:   PetscCall(PetscObjectComposeFunction((PetscObject)svd,"SVDCyclicSetEPS_C",SVDCyclicSetEPS_Cyclic));
    1086:   PetscCall(PetscObjectComposeFunction((PetscObject)svd,"SVDCyclicGetEPS_C",SVDCyclicGetEPS_Cyclic));
    1087:   PetscCall(PetscObjectComposeFunction((PetscObject)svd,"SVDCyclicSetExplicitMatrix_C",SVDCyclicSetExplicitMatrix_Cyclic));
    1088:   PetscCall(PetscObjectComposeFunction((PetscObject)svd,"SVDCyclicGetExplicitMatrix_C",SVDCyclicGetExplicitMatrix_Cyclic));
    1089:   PetscFunctionReturn(PETSC_SUCCESS);
    1090: }