# This output was generated with AUGUSTUS (version 3.3.1).
# AUGUSTUS is a gene prediction tool written by M. Stanke (mario.stanke@uni-greifswald.de),
# O. Keller, S. König, L. Gerischer, L. Romoth and Katharina Hoff.
# Please cite: Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler (2008),
# Using native and syntenically mapped cDNA alignments to improve de novo gene finding
# Bioinformatics 24: 637-644, doi 10.1093/bioinformatics/btn013
#
#----- prediction for species 'galGal4' -----
#
#----- prediction on sequence range chr14:51747-124691 (72945bp) -----
#
# start gene g2
chr14	AUGUSTUS	gene	76087	122802	.	+	.	g2
chr14	AUGUSTUS	transcript	76087	122802	.	+	.	g2.t1
chr14	AUGUSTUS	CDS	76087	76227	0.9	+	1	transcript_id "g2.t1"; gene_id "g2";
chr14	AUGUSTUS	exon	76087	76227	.	+	.	transcript_id "g2.t1"; gene_id "g2";
chr14	AUGUSTUS	CDS	90773	90913	1	+	1	transcript_id "g2.t1"; gene_id "g2";
chr14	AUGUSTUS	exon	90773	90913	.	+	.	transcript_id "g2.t1"; gene_id "g2";
chr14	AUGUSTUS	CDS	98845	98941	1	+	1	transcript_id "g2.t1"; gene_id "g2";
chr14	AUGUSTUS	exon	98845	98941	.	+	.	transcript_id "g2.t1"; gene_id "g2";
chr14	AUGUSTUS	CDS	106256	106393	1	+	0	transcript_id "g2.t1"; gene_id "g2";
chr14	AUGUSTUS	exon	106256	106393	.	+	.	transcript_id "g2.t1"; gene_id "g2";
chr14	AUGUSTUS	CDS	111306	111859	1	+	0	transcript_id "g2.t1"; gene_id "g2";
chr14	AUGUSTUS	exon	111306	111859	.	+	.	transcript_id "g2.t1"; gene_id "g2";
chr14	AUGUSTUS	CDS	113915	114091	1	+	1	transcript_id "g2.t1"; gene_id "g2";
chr14	AUGUSTUS	exon	113915	114091	.	+	.	transcript_id "g2.t1"; gene_id "g2";
chr14	AUGUSTUS	CDS	115264	115509	1	+	1	transcript_id "g2.t1"; gene_id "g2";
chr14	AUGUSTUS	exon	115264	115509	.	+	.	transcript_id "g2.t1"; gene_id "g2";
chr14	AUGUSTUS	CDS	119766	119933	1	+	1	transcript_id "g2.t1"; gene_id "g2";
chr14	AUGUSTUS	exon	119766	119933	.	+	.	transcript_id "g2.t1"; gene_id "g2";
chr14	AUGUSTUS	CDS	120886	121012	1	+	1	transcript_id "g2.t1"; gene_id "g2";
chr14	AUGUSTUS	exon	120886	122802	.	+	.	transcript_id "g2.t1"; gene_id "g2";
chr14	AUGUSTUS	stop_codon	121010	121012	.	+	0	transcript_id "g2.t1"; gene_id "g2";
chr14	AUGUSTUS	tts	122802	122802	.	+	.	transcript_id "g2.t1"; gene_id "g2";
# protein sequence = [HGSWREPVNPYYVNTGYAMAPATSANDSEQQSMSSDADTMSLTDSSMHGSWREPVNPYYVNTGYAMAPATSANDSEQQ
# SMSSDADTMSLTDSSIDGIPPYRLRKQHRREMQESAKANGRVPLPHIPRTYRMPKDIHVEPEKFAAELINRLEEVQKEREAEEKLEERLKRVRAEEEG
# EDADISSGPSVISHKMPSAQPFHHFAPRYSEMGCAGMQMRDAHEENPESILDEHVQRVMKTPGCQSPGPGRHSPKPRSPESGHLGKLSGTLGTIPPGH
# GKHTTKSGMKLDAANLYHHKHVYHHIHHHSMMKPKEQIEAEATQRVQNSFAWNVDSHNYATKSRNYSENLGMAPVPMDSLGYSGKASLLSKRNIKKTD
# SGKSDGANYEMPGSPEDVERNQKILQWIIEGEKEISRHKKTNHGSSGAKKQLSHDMVRPLSIERPVAVHPWVSAQLRNVVQPSHPFIQDPTMPPNPAP
# NPLTQLEEARRRLEEEEKRAGKLPLKQRLKPQKRPGSGASQPCENIVVAYYFCGEPIPYRTLVKGRVVTLGQFKELLTKKGNYRYYFKKVSDEFDCGV
# VFEEVREDDTILPIFEEKIIGKVEKID]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 89.5
# CDS exons: 9/9
#      W:   9 
# CDS introns: 7/9
#      E:   7 
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 1/1
#      W:   1 
# hint groups fully obeyed: 308
#      E:   7 
#     RM: 111 
#      W: 190 
# incompatible hint groups: 174
#      E:   1 
#      W: 173 
# end gene g2
###
# start gene g1
chr14	AUGUSTUS	gene	123490	124691	.	-	.	g1
chr14	AUGUSTUS	transcript	123490	124691	.	-	.	g1.t1
chr14	AUGUSTUS	tts	123490	123490	.	-	.	transcript_id "g1.t1"; gene_id "g1";
chr14	AUGUSTUS	exon	123490	123616	.	-	.	transcript_id "g1.t1"; gene_id "g1";
chr14	AUGUSTUS	stop_codon	123542	123544	.	-	0	transcript_id "g1.t1"; gene_id "g1";
chr14	AUGUSTUS	CDS	123542	123616	1	-	0	transcript_id "g1.t1"; gene_id "g1";
chr14	AUGUSTUS	CDS	123733	123819	1	-	0	transcript_id "g1.t1"; gene_id "g1";
chr14	AUGUSTUS	exon	123733	123819	.	-	.	transcript_id "g1.t1"; gene_id "g1";
chr14	AUGUSTUS	CDS	123921	124102	1	-	2	transcript_id "g1.t1"; gene_id "g1";
chr14	AUGUSTUS	exon	123921	124102	.	-	.	transcript_id "g1.t1"; gene_id "g1";
chr14	AUGUSTUS	CDS	124241	124361	1	-	0	transcript_id "g1.t1"; gene_id "g1";
chr14	AUGUSTUS	exon	124241	124361	.	-	.	transcript_id "g1.t1"; gene_id "g1";
chr14	AUGUSTUS	CDS	124456	124691	0.94	-	2	transcript_id "g1.t1"; gene_id "g1";
chr14	AUGUSTUS	exon	124456	124691	.	-	.	transcript_id "g1.t1"; gene_id "g1";
# protein sequence = [GDHGLSAAHRPLQVLFVVVDVDGYGATVLPFFGLKPSDAPTLRFIKMENNRKYRMEEDAFSATAVRDFVRAVLDGKVK
# PQLLSAEPPEDWDTRPVKVLVGKTFEQVAFDETKNVFVKFYAPWCTHCQEMAAAWEELGERYKDHEDIVIAEMDATANELENITISGYPTLHYFPAGP
# GRKMVEYRSARDVETFSKFLENGGKLPEEPPTVSKAPENSTESPSPSGAAEAREEL]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 100
# CDS exons: 5/5
#      W:   5 
# CDS introns: 4/4
#      E:   4 
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 1/1
#      W:   1 
# hint groups fully obeyed: 16
#      E:   4 
#     RM:   2 
#      W:  10 
# incompatible hint groups: 54
#      E:   1 
#      W:  53 
# end gene g1
###
