# This output was generated with AUGUSTUS (version 3.3.1).
# AUGUSTUS is a gene prediction tool written by M. Stanke (mario.stanke@uni-greifswald.de),
# O. Keller, S. König, L. Gerischer, L. Romoth and Katharina Hoff.
# Please cite: Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler (2008),
# Using native and syntenically mapped cDNA alignments to improve de novo gene finding
# Bioinformatics 24: 637-644, doi 10.1093/bioinformatics/btn013
#
#----- prediction for species 'bosTau8' -----
#
#----- prediction on sequence range chr25:87468-114924 (27457bp) -----
#
# start gene g1
chr25	AUGUSTUS	gene	87571	88735	0	+	.	g1
chr25	AUGUSTUS	transcript	87571	88735	.	+	.	g1.t1
chr25	AUGUSTUS	CDS	87571	87768	1	+	0	transcript_id "g1.t1"; gene_id "g1";
chr25	AUGUSTUS	exon	87571	87768	.	+	.	transcript_id "g1.t1"; gene_id "g1";
chr25	AUGUSTUS	CDS	87849	87969	0.98	+	0	transcript_id "g1.t1"; gene_id "g1";
chr25	AUGUSTUS	exon	87849	87969	.	+	.	transcript_id "g1.t1"; gene_id "g1";
chr25	AUGUSTUS	CDS	88046	88227	0.79	+	2	transcript_id "g1.t1"; gene_id "g1";
chr25	AUGUSTUS	exon	88046	88227	.	+	.	transcript_id "g1.t1"; gene_id "g1";
chr25	AUGUSTUS	CDS	88341	88451	0.73	+	0	transcript_id "g1.t1"; gene_id "g1";
chr25	AUGUSTUS	exon	88341	88451	.	+	.	transcript_id "g1.t1"; gene_id "g1";
chr25	AUGUSTUS	CDS	88574	88648	0.99	+	0	transcript_id "g1.t1"; gene_id "g1";
chr25	AUGUSTUS	exon	88574	88735	.	+	.	transcript_id "g1.t1"; gene_id "g1";
chr25	AUGUSTUS	stop_codon	88646	88648	.	+	0	transcript_id "g1.t1"; gene_id "g1";
chr25	AUGUSTUS	tts	88735	88735	.	+	.	transcript_id "g1.t1"; gene_id "g1";
# protein sequence = [VLFVVVDVGADNDHVLQYFGLKAQEAPTLRFINIETTKKYAPEHGAPVTAATITDFCRTVLGGGVKPYHLSQEVPPDW
# DQRPVKTLVGKNFEQVAFDETKNVFIKFYAPWCAHCKEMAPAWEELAEKYRDHEDVIIAELDATANELEAFPVHGFPTLKYFPAGPGRKVIDYKGARD
# LETFSKFLDSGGELPAEEPAEVPGAAFPEKPGNTTEPKDEKPGNTTEPRDEL]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 0
# CDS exons: 0/5
# CDS introns: 0/5
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/1
# hint groups fully obeyed: 1
#     RM:   1 
# incompatible hint groups: 1
#     RM:   1 
# end gene g1
###
# start gene g2
chr25	AUGUSTUS	gene	89050	103770	0	-	.	g2
chr25	AUGUSTUS	transcript	89050	103770	.	-	.	g2.t1
chr25	AUGUSTUS	tts	89050	89050	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	exon	89050	89762	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	stop_codon	89636	89638	.	-	0	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	CDS	89636	89762	0.98	-	1	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	CDS	90391	90558	1	-	1	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	exon	90391	90558	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	CDS	92029	92136	0.18	-	1	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	exon	92029	92136	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	CDS	93476	93721	0.98	-	1	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	exon	93476	93721	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	CDS	95734	95904	1	-	1	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	exon	95734	95904	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	CDS	96337	96863	0.05	-	0	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	exon	96337	96863	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	CDS	100197	100334	0.79	-	0	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	exon	100197	100334	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	CDS	101532	101655	0.01	-	1	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	exon	101532	101655	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	CDS	103316	103456	0.38	-	1	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	exon	103316	103456	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	CDS	103763	103770	0.84	-	0	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	exon	103763	103770	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	start_codon	103768	103770	.	-	0	transcript_id "g2.t1"; gene_id "g2";
# protein sequence = [MGQCGSWREPVNPYYVNSGYALAPATSANDSEQQSLSSDADSLSLTDSSVAALPSHWAECAWARLGHTEHRVPGAPLL
# AEQQSARAVRGKQRTYRMPKEVRVEPQKFAAELIHRLEAVQRTREAEEELEERLKRVRMEEEGEDSDMPSGPQGASHKLPSAPAWHHFPSRYADVGCT
# GLRDAHEENPESILDEHVQRVMRTPGCQSPGPGHRSPDSAHVPKIGVLGGAMPGHGKHAPKLGAKLDPTGLHLHRHGHHHGHHGAARPKEPAEAEAAR
# RVPGSFAWGPELHGHAAKPRSHVESTGAPPAGGDGLAYGGKVGTTSKRNSKKAELGKSSSTEAPGPSEDAEKNQKIMQWIIEGEKEISRHRKAGHGSS
# GAKKQQAHESSRPLSIERPGAVHPWVSAQLRSSVQPSHLFIQDPTMPPNPAPNPLTQLEEARRRLEEEEKRASKAPSKQRYVQEVIQRGRCCVRPACT
# PVLSAVPAVSDLELSETETKSQRKAGGGSTQPCDSIVVAYYFCGEPIPYRTLVRGRAVTLGQFKELLTKKGNYRFYFKKVSDEFECGVVFEEVREDTA
# VLPVFEEKIIGKVEKVD]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 0
# CDS exons: 0/10
# CDS introns: 0/9
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/1
# hint groups fully obeyed: 6
#     RM:   6 
# incompatible hint groups: 2
#     RM:   2 
# end gene g2
###
