/*
 * This file is part of the GROMACS molecular simulation package.
 *
 * Copyright 2012- The GROMACS Authors
 * and the project initiators Erik Lindahl, Berk Hess and David van der Spoel.
 * Consult the AUTHORS/COPYING files and https://www.gromacs.org for details.
 *
 * GROMACS is free software; you can redistribute it and/or
 * modify it under the terms of the GNU Lesser General Public License
 * as published by the Free Software Foundation; either version 2.1
 * of the License, or (at your option) any later version.
 *
 * GROMACS is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
 * Lesser General Public License for more details.
 *
 * You should have received a copy of the GNU Lesser General Public
 * License along with GROMACS; if not, see
 * https://www.gnu.org/licenses, or write to the Free Software Foundation,
 * Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301  USA.
 *
 * If you want to redistribute modifications to GROMACS, please
 * consider that scientific software is very special. Version
 * control is crucial - bugs must be traceable. We will be happy to
 * consider code for inclusion in the official distribution, but
 * derived work must not be called official GROMACS. Details are found
 * in the README & COPYING files - if they are missing, get the
 * official version at https://www.gromacs.org.
 *
 * To help us fund GROMACS development, we humbly ask that you cite
 * the research papers on the package. Check out https://www.gromacs.org.
 */
/*! \internal \file
 * \brief
 * Implements classes in moduletest.h.
 *
 * \author Teemu Murtola <teemu.murtola@gmail.com>
 * \ingroup module_trajectoryanalysis
 */
#include "gmxpre.h"

#include "moduletest.h"

#include <map>
#include <string>
#include <vector>

#include "gromacs/analysisdata/tests/datatest.h"
#include "gromacs/commandline/cmdlineoptionsmodule.h"
#include "gromacs/trajectoryanalysis/analysismodule.h"
#include "gromacs/trajectoryanalysis/cmdlinerunner.h"

#include "testutils/cmdlinetest.h"
#include "testutils/refdata.h"
#include "testutils/testasserts.h"

namespace gmx
{
namespace test
{

/********************************************************************
 * AbstractTrajectoryAnalysisModuleTestFixture::Impl
 */

class AbstractTrajectoryAnalysisModuleTestFixture::Impl
{
public:
    struct DatasetInfo
    {
        DatasetInfo() : bCheck(true), tolerance(defaultRealTolerance()) {}

        bool                   bCheck;
        FloatingPointTolerance tolerance;
    };

    typedef std::map<std::string, DatasetInfo> DatasetList;

    explicit Impl(AbstractTrajectoryAnalysisModuleTestFixture* parent);

    TrajectoryAnalysisModule& module();
    void                      ensureModuleCreated();
    bool                      hasCheckedDatasets() const;

    AbstractTrajectoryAnalysisModuleTestFixture& parent_;
    TrajectoryAnalysisModulePointer              module_;
    DatasetList                                  datasets_;
    bool                                         bDatasetsIncluded_;
};

AbstractTrajectoryAnalysisModuleTestFixture::Impl::Impl(AbstractTrajectoryAnalysisModuleTestFixture* parent) :
    parent_(*parent), bDatasetsIncluded_(false)
{
}

TrajectoryAnalysisModule& AbstractTrajectoryAnalysisModuleTestFixture::Impl::module()
{
    ensureModuleCreated();
    return *module_;
}

void AbstractTrajectoryAnalysisModuleTestFixture::Impl::ensureModuleCreated()
{
    if (module_.get() == nullptr)
    {
        module_ = parent_.createModule();
        const std::vector<std::string>& datasetNames(module_->datasetNames());
        datasets_.clear();
        std::vector<std::string>::const_iterator i;
        for (i = datasetNames.begin(); i != datasetNames.end(); ++i)
        {
            datasets_[*i] = DatasetInfo();
        }
    }
}

bool AbstractTrajectoryAnalysisModuleTestFixture::Impl::hasCheckedDatasets() const
{
    DatasetList::const_iterator dataset;
    for (dataset = datasets_.begin(); dataset != datasets_.end(); ++dataset)
    {
        if (dataset->second.bCheck)
        {
            return true;
        }
    }
    return false;
}

/********************************************************************
 * AbstractTrajectoryAnalysisModuleTestFixture
 */

AbstractTrajectoryAnalysisModuleTestFixture::AbstractTrajectoryAnalysisModuleTestFixture() :
    impl_(new Impl(this))
{
}

AbstractTrajectoryAnalysisModuleTestFixture::~AbstractTrajectoryAnalysisModuleTestFixture() {}

void AbstractTrajectoryAnalysisModuleTestFixture::setTopology(const char* filename)
{
    setInputFile("-s", filename);
}

void AbstractTrajectoryAnalysisModuleTestFixture::setTrajectory(const char* filename)
{
    setInputFile("-f", filename);
}

void AbstractTrajectoryAnalysisModuleTestFixture::includeDataset(const char* name)
{
    impl_->ensureModuleCreated();
    if (!impl_->bDatasetsIncluded_)
    {
        Impl::DatasetList::iterator i;
        for (i = impl_->datasets_.begin(); i != impl_->datasets_.end(); ++i)
        {
            i->second.bCheck = false;
        }
    }
    Impl::DatasetList::iterator dataset = impl_->datasets_.find(name);
    const bool                  bFound  = (dataset != impl_->datasets_.end());
    GMX_RELEASE_ASSERT(bFound, "Attempted to include a non-existent dataset");
    dataset->second.bCheck = true;
}

void AbstractTrajectoryAnalysisModuleTestFixture::excludeDataset(const char* name)
{
    impl_->ensureModuleCreated();
    Impl::DatasetList::iterator dataset = impl_->datasets_.find(name);
    const bool                  bFound  = (dataset != impl_->datasets_.end());
    GMX_RELEASE_ASSERT(bFound, "Attempted to exclude a non-existent dataset");
    dataset->second.bCheck = false;
}

void AbstractTrajectoryAnalysisModuleTestFixture::setDatasetTolerance(const char* name,
                                                                      const FloatingPointTolerance& tolerance)
{
    impl_->ensureModuleCreated();
    Impl::DatasetList::iterator dataset = impl_->datasets_.find(name);
    const bool                  bFound  = (dataset != impl_->datasets_.end());
    GMX_RELEASE_ASSERT(bFound, "Attempted to set a tolerance for a non-existent dataset");
    dataset->second.tolerance = tolerance;
}

void AbstractTrajectoryAnalysisModuleTestFixture::runTest(const CommandLine& args)
{
    TrajectoryAnalysisModule& module  = impl_->module();
    CommandLine&              cmdline = commandLine();
    cmdline.merge(args);

    TestReferenceChecker rootChecker(this->rootChecker());
    rootChecker.checkString(args.toString(), "CommandLine");

    if (impl_->hasCheckedDatasets())
    {
        TestReferenceChecker dataChecker(rootChecker.checkCompound("OutputData", "Data"));
        Impl::DatasetList::const_iterator dataset;
        for (dataset = impl_->datasets_.begin(); dataset != impl_->datasets_.end(); ++dataset)
        {
            if (dataset->second.bCheck)
            {
                const char* const     name = dataset->first.c_str();
                AbstractAnalysisData& data = module.datasetFromName(name);
                AnalysisDataTestFixture::addReferenceCheckerModule(
                        dataChecker, name, &data, dataset->second.tolerance);
            }
        }
    }

    ICommandLineOptionsModulePointer runner(
            TrajectoryAnalysisCommandLineRunner::createModule(std::move(impl_->module_)));
    int rc = 0;
    EXPECT_NO_THROW_GMX(rc = CommandLineTestHelper::runModuleDirect(std::move(runner), &cmdline));
    EXPECT_EQ(0, rc);

    checkOutputFiles();
}

} // namespace test
} // namespace gmx
