.. _user guide:

**********
User guide
**********

.. highlight:: bash

This guide provides

* material introducing |Gromacs|
* practical advice for making effective use of |Gromacs|.

For getting, building and installing |Gromacs|, see the
:doc:`/install-guide/index`.
For background on algorithms and implementations, see the
:ref:`reference manual part <gmx-reference-manual-rst>` of the documentation.
If you have questions not answered by these resources, 
please visit the `GROMACS users forum <https://gromacs.bioexcel.eu/>`_
and search for a potential answer or ask a question from the community.

|GMX_MANUAL_DOI_STRING|

|GMX_SOURCE_DOI_STRING|

.. todo::

   This is going to require more organization now that
   we are getting more content available.

.. toctree::
   :maxdepth: 2

   known-issues
   getting-started
   system-preparation
   managing-simulations
   faq
   force-fields
   mdp-options
   mdrun-features
   mdrun-performance
   run-time-errors
   cmdline
   terminology
   environment-variables
   floating-point
   security
   deprecation-policy
