##fileformat=VCFv4.3
##FILTER=<ID=PASS,Description="All filters passed">
##contig=<ID=11,length=135006516>
##contig=<ID=12,length=135006516>
##FILTER=<ID=flt,Description="Test FILTER">
##INFO=<ID=INDEL,Number=0,Type=Flag,Description="Indicates that the variant is an INDEL.">
##INFO=<ID=DP,Number=1,Type=Integer,Description="Total Depth">
##INFO=<ID=AC,Number=A,Type=Integer,Description="Allele count in genotypes">
##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes">
##INFO=<ID=XRF,Number=R,Type=Float,Description="Test Number=AGR in INFO">
##INFO=<ID=XAF,Number=A,Type=Float,Description="Test Number=AGR in INFO">
##INFO=<ID=XGF,Number=G,Type=Float,Description="Test Number=AGR in INFO">
##INFO=<ID=XRI,Number=R,Type=Integer,Description="Test Number=AGR in INFO">
##INFO=<ID=XAI,Number=A,Type=Integer,Description="Test Number=AGR in INFO">
##INFO=<ID=XGI,Number=G,Type=Integer,Description="Test Number=AGR in INFO">
##INFO=<ID=XRS,Number=R,Type=String,Description="Test Number=AGR in INFO">
##INFO=<ID=XAS,Number=A,Type=String,Description="Test Number=AGR in INFO">
##INFO=<ID=XGS,Number=G,Type=String,Description="Test Number=AGR in INFO">
##INFO=<ID=ISTR,Number=1,Type=String,Description="Test String in INFO">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FORMAT=<ID=FSTR,Number=1,Type=String,Description="Test String in FORMAT">
##FORMAT=<ID=FFI,Number=1,Type=Integer,Description="Test Integer in FORMAT">
##FORMAT=<ID=FFF,Number=1,Type=Float,Description="Test Float in FORMAT">
##FORMAT=<ID=FAF,Number=A,Type=Float,Description="Test Number=AR in FORMAT">
##FORMAT=<ID=FAI,Number=A,Type=Integer,Description="Test Number=AR in FORMAT">
##FORMAT=<ID=FAS,Number=A,Type=String,Description="Test Number=AR in FORMAT">
##FORMAT=<ID=FRF,Number=R,Type=Float,Description="Test Number=AR in FORMAT">
##FORMAT=<ID=FRI,Number=R,Type=Integer,Description="Test Number=AR in FORMAT">
##FORMAT=<ID=FRS,Number=R,Type=String,Description="Test Number=AR in FORMAT">
##FORMAT=<ID=PL,Number=G,Type=Integer,Description="Test Number=G in FORMAT">
##INFO=<ID=OLD_REC,Number=1,Type=String,Description="Original variant. Format: CHR|POS|REF|ALT|USED_ALT_IDX">
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	S1	S2	S3	S4
11	101	.	G	C	.	.	OLD_REC=11|101|GCGT|G,GCGA,GTGA,CCGT|4	GT	0	0	0	1
11	101	.	G	*	.	.	OLD_REC=11|101|GCGT|G,GCGA,GTGA,CCGT|4	GT	1	0	0	0
11	101	.	GCGT	G	.	.	OLD_REC=11|101|GCGT|G,GCGA,GTGA,CCGT|1	GT	1	0	0	0
11	101	.	GCGT	*	.	.	OLD_REC=11|101|GCGT|G,GCGA,GTGA,CCGT|1	GT	0	1	1	1
11	102	.	C	T	.	.	OLD_REC=11|101|GCGT|G,GCGA,GTGA,CCGT|3	GT	0	0	1	0
11	102	.	C	*	.	.	OLD_REC=11|101|GCGT|G,GCGA,GTGA,CCGT|3	GT	1	0	0	0
11	104	.	T	A	.	.	OLD_REC=11|101|GCGT|G,GCGA,GTGA,CCGT|2,3	GT	0	1	1	0
11	104	.	T	*	.	.	OLD_REC=11|101|GCGT|G,GCGA,GTGA,CCGT|2,3	GT	1	0	0	0
11	201	.	C	G	.	.	OLD_REC=11|201|CC|GG,GT|1,2	GT	0	1	1	0
11	201	.	C	*	.	.	OLD_REC=11|201|CC|GG,GT|1,2	GT	0	0	0	0
11	202	.	C	G	.	.	OLD_REC=11|201|CC|GG,GT|1	GT	0	1	0	0
11	202	.	C	*	.	.	OLD_REC=11|201|CC|GG,GT|1	GT	0	0	1	0
11	202	.	C	T	.	.	OLD_REC=11|201|CC|GG,GT|2	GT	0	0	1	0
11	202	.	C	*	.	.	OLD_REC=11|201|CC|GG,GT|2	GT	0	1	0	0
12	101	rs101	G	C	199	flt	INDEL;AN=4;AC=4;DP=19;ISTR=SomeString;XRF=0,4;XRI=0,4;XRS=000,xx;XAF=4;XAI=444;XAS=zzz;OLD_REC=12|101|GCGT|G,GCGA,GTGA,CCGT|4	GT	0/0	0/0	0/0	0/1
12	101	rs101	G	*	199	flt	INDEL;AN=4;AC=.;DP=19;ISTR=SomeString;XRF=0,.;XRI=0,.;XRS=000,.;XAF=.;XAI=.;XAS=.;OLD_REC=12|101|GCGT|G,GCGA,GTGA,CCGT|4	GT	0/1	1/0	0/0	0/0
12	101	rs101	GCGT	G	199	flt	INDEL;AN=4;AC=1;DP=19;ISTR=SomeString;XRF=0,10;XRI=0,1111;XRS=000,AAA;XAF=10;XAI=1111;XAS=AAA;OLD_REC=12|101|GCGT|G,GCGA,GTGA,CCGT|1	GT	0/1	1/0	0/0	0/0
12	101	rs101	GCGT	*	199	flt	INDEL;AN=4;AC=.;DP=19;ISTR=SomeString;XRF=0,.;XRI=0,.;XRS=000,.;XAF=.;XAI=.;XAS=.;OLD_REC=12|101|GCGT|G,GCGA,GTGA,CCGT|1	GT	0/0	0/1	1/1	1/1
12	102	rs101	C	T	199	flt	INDEL;AN=4;AC=3;DP=19;ISTR=SomeString;XRF=0,300000;XRI=0,3333;XRS=000,DDD;XAF=3;XAI=33;XAS=xx;OLD_REC=12|101|GCGT|G,GCGA,GTGA,CCGT|3	GT	0/0	0/0	0/1	0/0
12	102	rs101	C	*	199	flt	INDEL;AN=4;AC=.;DP=19;ISTR=SomeString;XRF=0,.;XRI=0,.;XRS=000,.;XAF=.;XAI=.;XAS=.;OLD_REC=12|101|GCGT|G,GCGA,GTGA,CCGT|3	GT	0/1	1/0	0/0	0/0
12	104	rs101	T	A	199	flt	INDEL;AN=4;AC=2;DP=19;ISTR=SomeString;XRF=0,200;XRI=0,2222;XRS=000,BBB;XAF=200000;XAI=22;XAS=DDD;OLD_REC=12|101|GCGT|G,GCGA,GTGA,CCGT|2,3	GT	0/0	0/1	1/1	1/0
12	104	rs101	T	*	199	flt	INDEL;AN=4;AC=.;DP=19;ISTR=SomeString;XRF=0,.;XRI=0,.;XRS=000,.;XAF=.;XAI=.;XAS=.;OLD_REC=12|101|GCGT|G,GCGA,GTGA,CCGT|2,3	GT	0/1	1/0	0/0	0/0
12	201	.	C	G	.	.	OLD_REC=12|201|CC|GG,GT|1,2	GT:FSTR:FFI:FFF:FAF:FAI:FAS:FRF:FRI:FRS:PL	0/0:xx:0:0:1.1:1:a:0,1.1:0,1:a,b:0,1,2	1:yy:11:1.1:1.1:1:a:0,1.1:0,1:a,b:0,2	1/1:zz:22:2.2:1.1:1:a:0,1.1:0,1:a,b:0,1,2	0:.:.:.:.:.:.:.,1.1:.,.:.,.:.
12	201	.	C	*	.	.	OLD_REC=12|201|CC|GG,GT|1,2	GT:FSTR:FFI:FFF:FAF:FAI:FAS:FRF:FRI:FRS:PL	0/0:xx:0:0:.:.:.:0,.:0,.:a,.:0,.,.	0:yy:11:1.1:.:.:.:0,.:0,.:a,.:0,.	0/0:zz:22:2.2:.:.:.:0,.:0,.:a,.:0,.,.	0:.:.:.:.:.:.:.,1.1:.,.:.,.:.
12	202	.	C	G	.	.	OLD_REC=12|201|CC|GG,GT|1	GT:FSTR:FFI:FFF:FAF:FAI:FAS:FRF:FRI:FRS:PL	0/0:xx:0:0:1.1:1:a:0,1.1:0,1:a,b:0,1,2	1:yy:11:1.1:1.1:1:a:0,1.1:0,1:a,b:0,2	0/0:zz:22:2.2:1.1:1:a:0,1.1:0,1:a,b:0,1,2	0:.:.:.:.:.:.:.,1.1:.,.:.,.:.
12	202	.	C	*	.	.	OLD_REC=12|201|CC|GG,GT|1	GT:FSTR:FFI:FFF:FAF:FAI:FAS:FRF:FRI:FRS:PL	0/0:xx:0:0:.:.:.:0,.:0,.:a,.:0,.,.	0:yy:11:1.1:.:.:.:0,.:0,.:a,.:0,.	1/1:zz:22:2.2:.:.:.:0,.:0,.:a,.:0,.,.	0:.:.:.:.:.:.:.,1.1:.,.:.,.:.
12	202	.	C	T	.	.	OLD_REC=12|201|CC|GG,GT|2	GT:FSTR:FFI:FFF:FAF:FAI:FAS:FRF:FRI:FRS:PL	0/0:xx:0:0:2.2:2:b:0,2.2:0,2:a,c:0,3,5	0:yy:11:1.1:2.2:2:b:0,2.2:0,2:a,c:0,5	1/1:zz:22:2.2:2.2:2:b:0,2.2:0,2:a,c:0,3,5	0:.:.:.:.:.:.:.,2.2:.,.:.,.:.
12	202	.	C	*	.	.	OLD_REC=12|201|CC|GG,GT|2	GT:FSTR:FFI:FFF:FAF:FAI:FAS:FRF:FRI:FRS:PL	0/0:xx:0:0:.:.:.:0,.:0,.:a,.:0,.,.	1:yy:11:1.1:.:.:.:0,.:0,.:a,.:0,.	0/0:zz:22:2.2:.:.:.:0,.:0,.:a,.:0,.,.	0:.:.:.:.:.:.:.,2.2:.,.:.,.:.
