##fileformat=VCFv4.3
##FILTER=<ID=PASS,Description="All filters passed">
##reference=file://ref.fa
##INFO=<ID=END,Number=1,Type=Integer,Description="End coordinate">
##contig=<ID=1,assembly=b37,length=249250621>
##contig=<ID=2,assembly=b37,length=249250621>
##contig=<ID=3,assembly=b37,length=249250621>
##FILTER=<ID=SnpGap,Description="SNP within 2 bp of mnp,indel,other">
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO
1	1000	.	G	A	.	PASS	.
1	1001	.	G	A	.	SnpGap	.
1	1003	.	GG	G	.	PASS	.
1	1006	.	G	A	.	SnpGap	.
1	1007	.	G	A	.	PASS	.
2	1000	.	G	A	.	PASS	.
2	1001	.	G	A	.	SnpGap	.
2	1003	.	G	<DEL>	.	PASS	END=1004
2	1006	.	G	A	.	SnpGap	.
2	1007	.	G	A	.	PASS	.
3	1000	.	G	A	.	PASS	.
3	1001	.	G	A	.	SnpGap	.
3	1003	.	GG	AA	.	PASS	.
3	1006	.	G	A	.	SnpGap	.
3	1007	.	G	A	.	PASS	.
