##fileformat=VCFv4.3
##FILTER=<ID=PASS,Description="All filters passed">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FORMAT=<ID=PL,Number=G,Type=Integer,Description="Genotype Likelihoods">
##FORMAT=<ID=GL,Number=G,Type=Float,Description="Genotype Likelihoods">
##FORMAT=<ID=AD,Number=R,Type=Integer,Description="Allelic Depths">
##FORMAT=<ID=DF,Number=R,Type=Float,Description="Dummy">
##FORMAT=<ID=DD,Number=A,Type=Integer,Description="Dummy">
##contig=<ID=1,assembly=b37,length=249250621>
##reference=ref.fa
##FORMAT=<ID=LAA,Number=.,Type=Integer,Description="Localized alleles: subset of alternate alleles relevant for each sample">
##FORMAT=<ID=LPL,Number=.,Type=Integer,Description="Localized field: Genotype Likelihoods">
##FORMAT=<ID=LGL,Number=.,Type=Float,Description="Localized field: Genotype Likelihoods">
##FORMAT=<ID=LAD,Number=.,Type=Integer,Description="Localized field: Allelic Depths">
##FORMAT=<ID=LDF,Number=.,Type=Float,Description="Localized field: Dummy">
##FORMAT=<ID=LDD,Number=.,Type=Integer,Description="Localized field: Dummy">
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	A	2:A	3:A
1	30000	.	C	T	.	.	.	GT:PL:GL:AD:DF:DD	0/1:20,0,20:20,0,20:1,2:0.1,0.2:1	0/1:20,0,20:20,0,20:1,2:0.1,0.2:1	0/1:20,0,20:20,0,20:1,2:0.1,0.2:1
1	30001	.	C	CA,CC,CG	.	.	.	GT:LPL:LGL:LAD:LDF:LDD:LAA	0/1:10,0,10:10,0,10:1,2:0.1,0.2:1:1	0/2:10,0,10:10,0,10:1,2:0.1,0.2:1:2	0/3:10,0,10:10,0,10:1,2:0.1,0.2:1:3
1	30002	.	C	CA,CAA,CC,CCC,CG,CGG	.	.	.	GT:LPL:LGL:LAD:LDF:LDD:LAA	1/2:20,20,20,10,0,10:20,20,20,10,0,10:0,1,2:0,0.1,0.2:1,2:1,2	3/4:20,20,20,10,0,10:20,20,20,10,0,10:0,1,2:0,0.1,0.2:1,2:3,4	5/6:20,20,20,10,0,10:20,20,20,10,0,10:0,1,2:0,0.1,0.2:1,2:5,6
1	30003	.	C	CA,CAA,CAAA	.	.	.	GT:LPL:LGL:LAD:LDF:LDD:LAA	1/2:20,20,20,10,0,10:20,20,20,10,0,10:0,1,2:0,0.1,0.2:1,2:1,2	./.:.:.:.:.:.:.,.	./.:.:.:.:.:.:.
1	30004	.	C	CC,CCC,CCCC	.	.	.	GT:LPL:LGL:LAD:LDF:LDD:LAA	./.:.:.:.:.:.:.	1/2:20,20,20,10,0,10:20,20,20,10,0,10:0,1,2:0,0.1,0.2:1,2:1,2	./.:.:.:.:.:.:.,2
1	30005	.	C	CG,CGG,CGGG	.	.	.	GT:LPL:LGL:LAD:LDF:LDD:LAA	./.:.:.:.:.:.:.	./.:.:.:.:.:.:.,.	1/2:20,20,20,10,0,10:20,20,20,10,0,10:0,1,2:0,0.1,0.2:1,2:1,2
