##fileformat=VCFv4.2
##FILTER=<ID=PASS,Description="All filters passed">
##reference=file:///hs37d5.fa
##contig=<ID=1,length=249250621>
##contig=<ID=2,length=243199373>
##contig=<ID=3,length=198022430>
##contig=<ID=4,length=191154276>
##contig=<ID=5,length=180915260>
##contig=<ID=6,length=171115067>
##contig=<ID=7,length=159138663>
##contig=<ID=8,length=146364022>
##contig=<ID=9,length=141213431>
##contig=<ID=10,length=135534747>
##contig=<ID=11,length=135006516>
##contig=<ID=12,length=133851895>
##contig=<ID=13,length=115169878>
##contig=<ID=14,length=107349540>
##contig=<ID=15,length=102531392>
##contig=<ID=16,length=90354753>
##contig=<ID=17,length=81195210>
##contig=<ID=18,length=78077248>
##contig=<ID=19,length=59128983>
##contig=<ID=20,length=63025520>
##contig=<ID=21,length=48129895>
##contig=<ID=22,length=51304566>
##ALT=<ID=*,Description="Represents allele(s) other than observed.">
##INFO=<ID=INDEL,Number=0,Type=Flag,Description="Indicates that the variant is an INDEL.">
##INFO=<ID=IDV,Number=1,Type=Integer,Description="Maximum number of raw reads supporting an indel">
##INFO=<ID=IMF,Number=1,Type=Float,Description="Maximum fraction of raw reads supporting an indel">
##INFO=<ID=DP,Number=1,Type=Integer,Description="Raw read depth">
##INFO=<ID=VDB,Number=1,Type=Float,Description="Variant Distance Bias for filtering splice-site artefacts in RNA-seq data (bigger is better)",Version="3">
##INFO=<ID=RPB,Number=1,Type=Float,Description="Mann-Whitney U test of Read Position Bias (bigger is better)">
##INFO=<ID=MQB,Number=1,Type=Float,Description="Mann-Whitney U test of Mapping Quality Bias (bigger is better)">
##INFO=<ID=BQB,Number=1,Type=Float,Description="Mann-Whitney U test of Base Quality Bias (bigger is better)">
##INFO=<ID=MQSB,Number=1,Type=Float,Description="Mann-Whitney U test of Mapping Quality vs Strand Bias (bigger is better)">
##INFO=<ID=SGB,Number=1,Type=Float,Description="Segregation based metric.">
##INFO=<ID=MQ0F,Number=1,Type=Float,Description="Fraction of MQ0 reads (smaller is better)">
##FORMAT=<ID=PL,Number=G,Type=Integer,Description="List of Phred-scaled genotype likelihoods">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##INFO=<ID=AC,Number=A,Type=Integer,Description="Allele count in genotypes for each ALT allele, in the same order as listed">
##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes">
##INFO=<ID=DP4,Number=4,Type=Integer,Description="Number of high-quality ref-forward , ref-reverse, alt-forward and alt-reverse bases">
##INFO=<ID=MQ,Number=1,Type=Integer,Description="Average mapping quality">
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	A
1	790667	.	C	T	.	.	.	GT	.
1	116844268	.	GA	G	58.5765	.	DP=1;MQ0F=0;AC=0;AN=2;DP4=1,0,0,0;MQ=60	GT:PL	0/0:0,3,32
1	116844279	.	GAAAAAAAAAAAAAAAA	GAAAAAAAAAAAAAA	24.1741	.	INDEL;IDV=1;IMF=0.5;DP=2;VDB=0.5;SGB=-0.379885;MQSB=1;MQ0F=0;AC=0;AN=2;DP4=0,1,1,0;MQ=60	GT:PL	0/0:6,0,6
1	116844450	.	T	A	.	.	.	GT	.
20	68799	.	T	C	.	.	.	GT	.
20	68810	.	G	A	.	.	.	GT	.
20	69066	.	C	G	59.5765	.	DP=1;MQ0F=0;AC=0;AN=2;DP4=0,1,0,0;MQ=60	GT:PL	0/0:0,3,33
20	69094	.	G	A	.	.	.	GT	.
20	69408	.	C	T	.	.	.	GT	.
21	9411409	.	T	C	.	.	.	GT	.
21	9411485	.	C	A	.	.	.	GT	.
21	9411497	.	A	G	.	.	.	GT	.
21	9412485	.	C	G	78.5768	.	DP=2;MQ0F=0;AC=0;AN=2;DP4=1,0,0,0;MQ=52	GT:PL	0/0:0,3,52
16	60288	.	C	A	.	.	.	GT	.
17	355	.	G	A	.	.	.	GT	.
